Discussions

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  vdj, adata = ddl.pp.check_contigs(vdj, adata) not working

  MariusMathies asked Aug 12, 2024 in Q&A · Unanswered

  

  

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  IndexError: list index out of range

  MariusMathies started Jun 25, 2024 in General

  

  

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  Separate healthy from neoplastic cells using 5'-BCR seq.

  cv55 asked Apr 29, 2024 in Q&A · Unanswered

  

  

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  Preprocessing Dandelion

  nezirajt started Apr 30, 2024 in General

  

  

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  Dandelion output description

  cv55 asked Mar 13, 2024 in Q&A · Unanswered

  

  

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  generate_network took forever

  zhouzhendiao asked Jul 27, 2023 in Q&A · Answered

  

  

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  Can I use the all-contig-anonotation file to reannotate γδTCR? Even though most of the files are low confident in Cell Ranger (v7.0) all-contig-anonotation output

  HACKYANG123 asked Oct 19, 2023 in Q&A · Unanswered

  

  

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  Mouse VDJ Data

  hungms started Sep 5, 2023 in General

  

  

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  Did not find X_scvi in .obsm.keys().

  dxl3742 asked Aug 25, 2023 in Q&A · Unanswered

  

  

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  About "No_contig"

  TsingYoo asked Jul 23, 2023 in Q&A · Answered

  

  

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  Which Input is recommanded on step re-annotation, all or filtered?

  zhouzhendiao asked Jul 4, 2023 in Q&A · Answered

  

  

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  Default 'flavour' behaviour for singularity preprocessing

  benjacobs123456 asked May 20, 2023 in Q&A · Closed · Unanswered

  

  

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  Analysis with limited sorts of 10X BCR output

  jaesoonpark asked Mar 16, 2023 in Q&A · Answered

  

  

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  reproducing network graph

  avilella started Apr 26, 2021 in General

  

  

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  [QUESTION]

  question Further information is requested

  saramoein372 asked Feb 11, 2022 in Q&A · Answered

  

  

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  [QUESTION]

  question Further information is requested

  saramoein372 started Apr 1, 2022 in General

  

  

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  ImportError: Unable to initialise R instance. Please run this separately through R with Shazam's tutorial.

  saramoein372 started Sep 21, 2021 in General

  

  

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  COVID-19 PBMC Ncl-Cambridge-UCL

  question Further information is requested

  saramoein372 started Jul 27, 2022 in General

  

  

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  I am confused, and need your help

  question Further information is requested

  saramoein372 started Jul 11, 2022 in General

  

  

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  Combining samples

  saramoein372 started Oct 19, 2021 in General

  

  

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  Network generation

  saramoein372 started Oct 5, 2021 in General

  

  

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  Extracting the cell_id from the network

  saramoein372 started Oct 4, 2021 in General

  

  

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  Singularity error

  saramoein372 started Oct 1, 2021 in General

  

  

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  Tree from BCR clone_id after BCR clustering

  saramoein372 started Sep 27, 2021 in General

  

  

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  filtered_feature_bc_matrix.h5

  saramoein372 started Sep 23, 2021 in General

  

  

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