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rsMap3D - A Python application for transforming images collected in an X-ray scattering experiment into a 3D reciprocal space map
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zhanzhang3/rsMap3D
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rsMap3D is a Python program for transforming a set of images collected as part of an x-ray scattering experiment into a 3D reciprocal space map. Version 1.0.8 of xrayutilities was tested on Windows 7 with: 6/10/2016 xrayutilities-1.2.1-cp27-cp27m-win_amd64.whl found at https://confluence.aps.anl.gov/display/RSM/Binary+Distributions+of+Python+Packages spec2nexus 2016.0601.0 installed via pip install from pypi. For Mac and Linux, it is best to use the same versions from pypi install with pip install Fixed an issue with calculating angles when doing sixc geometry and scanning a real angle. The code was acting like it needed to compute from pseudo angle scan. Version 1.0.9 testes with same versions as above: Fixed an issue with pole figure maps. Had a couple of bugs left from recent refactoring. Version 1.0.10 Test with same xrayutilites Add code to Sector33SpecDataSource to handle runs that have been aborted. To work with spec files that have beamline specific entries, not handled by a plugin must have spec2nexus version 2016.0615.1. Version 1.0.13 - 2016/10/27 The structure of input and output controls, and on the back end DataSource classes and Mapper classes have been reworked to allow output of data to different formats. In particular, the input Forms hold information on what type of output is allowed/needed for that kind of data. Up till this point, only output to VTI files was allowed. A stock list of input forms is still provided. A pull-down combo box allows switching between input forms, As a different form is selected, a list of allowed output forms is created and placed on the "Process Data" tab. The default form is set active. Each output form can then also specify a list of "Writers" to be used for selecting the format of the output data. At this point vti (the only choice till now), a stack of TIFF images, slicing through the 3D volume, and for XPCS data, a CSV file containing the qx, qy, qz values for the single position used to collect time series data in an XPCS scan. Energy scan data from sector 34 is working, but at present writes only VTI files. The Sector 33 scan format is working for sector 7, & 30. Still working along with these beamlines to do some post processing. Version 1.0.14 - 2016/10/27 Needed to fix list of packages in setup.py did a re-release. Version 1.0.15 - 2016/10/27 Needed to fix list of packages in setup.py did a re-release. Version 1.0.16 - 2016/10/31 Needed to fix handling method when pyimm is not found.ZZ Version 1.0.17 - Changes to allow output of ascii vti file. Version 1.0.18 - 2016-11-8 Readd missing string constant in common strings file. Version 1.0.19 - 2016-11-8 Readd missing string logger constants in common strings file. Version 1.0.20 - 2017-03-03 Changed the Signal/Slot mechanism to use a newer version that will be used moving forward. This will allow moving more easily to Python 3 and PyQt 5.x. Note that for now there are issues with VTK/PyQt integration with PyQt 5.x so for now need to stick with PyQt 4.11 and Python 2.7. Fixed a problem introduced when the output of data was split out into writers. The calculation of y data (qy or k) was using x-data instead of Y. This did not cause a problem when X&Y were using same range but when they were different, qy/k was wrong. Version 1.1.0 - 2017-05-22 Switch Configuration to use python's config parser Made it possible to edit which Version 1.1.1 - 2017-06-08 Change the angle mapping code esp in S33SpecDataSource so that the angle mapping function can live in a module outside of the S33SpecDataSource class. This will make it easier for the user to add mapping functions. Now they would simply need to add a module to the PYTHONPATH, and add the module name (w/ package path if necessary). Version 1.1.2 - 2017-06-08 Revert s1highenergydatasource to a previous version with no mpi Version 1.1.3 - 2017-06-08 Remove @profile from s1highenergydatasource Version 1.1.4 - 2017-06-08 Remove @profile from s1highenergydatasource didn't take last time. Version 1.1.5 - 2017-08-01 Add support for ccdscans from the XPCS beamlines. This uses spec to scan and store angle information and IMM files (local to APS) to store images. The spec file has '#CCD ccdscan scannum' line to indicate this type of scan. For now supporting subtraction of dark images (averaged without the first dark Image, reading the location of files from the '#CCD image_dir' line and replacing the base part of this image directory for cases where the data has been copied to another computer. Version 1.1.6 - 2017-08-04 To keep up with some interpreter versions being sensitive to this have switched '== None' with 'is None' Version 1.1.7 Add powderscan output for sector 33. Play around with new setup.py. Added resources directory with example xml and also get the LICENSE file into the distro. Version 1.1.8 2017-11-7 Fix problem selecting only a one or two images to process from a scan. This caused a problem if the size of the scan was such that processing was done in a number of passes based on user defined amount of memory to use and the size and number of images to process. Add Powder scan form into the S33 scan form. Version 1.1.9 2017-11-7 Fix Gridmapper to show 100% when done. Fix S1 to show 100% when done loading. Version 1.2.0rc1 2019-04-02 The major change is to switch to Python 3 and PyQt5, and VTK 8.2, with as little change to the overall code as psosible. So far, this has been tested on Mac with Anaconda Python (custom version has been updated), with conda 4.6.7(conda-build version: 3.4.1), python 3.6.8.final.0. Version 1.2.0rc2 2019-04-02 Fix a bug creating an new configuration file when one does not exist. Version 1.2.0rc2 2019-04-02 Mostly fix issues in Py2 to 3 conversion. File dialogs now return a list even for single file operations. Needed to pick list element as 0th element in using single file selection. Version 1.2.0rc4 2019-04-02 Fix a problem with extracting the UB matrix from the scan file. This was due to a change in Pythons built-in 'map' function. This caused a problem using the output to create a numpy array. Version 1.2.1 2019-07-11 Finalize 1.2 release & add a function to copy one motor columns data to another column. This is useful when both sample and detector have the same motor. Cannot include the same motor twice. This allows setting up a dummy motor to copy another array into it.
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rsMap3D - A Python application for transforming images collected in an X-ray scattering experiment into a 3D reciprocal space map
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