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Morpho 1.0-2
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@zarquon42b zarquon42b released this 05 Nov 09:40
· 1000 commits to master since this release
1.0-2
e559c59

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Caution: the latest version of rgl (>= 0.93.963) and doParallel (>= 1.0.6) is required

Changes in Morpho version 1.0-2 (2013-11-05)

  • added option "barycoords" in 'closemeshKD' and added normal weighting
  • made reprojection ind 'slider3d' using multiple cores in case "meshlist" is specified
  • added option "blockdiag" in 'CreateL' to supress returning blockdiagonal matrix containin Lsubk
  • significant speedup in calcGamma (responsible for sliding)
  • added option "meshlist" in 'slider3d' and fixed memory
    allocation problem for orthogonal projection with large amounts of
    landmarks in 'procSym' (underlying routine 'orp')
  • added autonaming of output in write.pts
  • 'mergeMeshes' now allows a list of meshes to merge
  • fixed error in 'mcNNindex' in case k=1
  • added landmark matrix to output of 'cExtract'
  • set pointsize to 10 in 'deformGrid3d' in case "type="p""
  • added options "silent"/"ignore.stdout" to 'ply2mesh',
    'projRead', 'ray2mesh', 'slider3d' and
    'warp.mesh' to supress terminal output
  • added option "pt.size" instead of "radius" in 'checkLM' and 'plotAtlas' to control point/sphere size.
  • added option "fixRepro" in 'slider3d' and 'relaxLM' to supress
    reprojection of fix landmarks onto the surface. This can be useful
    when some fix landmarks are in "thin air".
  • added support for point cloud export in 'mesh2ply' and 'mesh2obj'
  • added option "silent" in 'rmUnrefVertex'
  • fixed error in 'relWarps' preventing it to work for 2D configs
  • added function 'checkLM'. Useful to visualize if projection by
    'placePatch' was successful by browsing through sample.
  • added functions 'placePatch', 'createAtlas' and 'plotAtlas'
    for defining templates and functions to project (semi-) landmarks from
    an atlas onto all specimen in a given sample
  • fixed missing '-1' subtraction in 'covW'
  • added function 'mergeMeshes' to concatenate multiple triangular meshes.
  • made function 'procAOVsym' (procrustes Anova for object
    symmetry) public.
  • made functions 'cSize', 'mcNNindex', 'meshcube', 'meshres', 'ProcGPA' public.
  • added option 'info' in 'read.mpp'
  • merged 'CreateL' and 'CreateL2D'
  • rewrote large parts of 'CVA', 'groupPCA' and 'permudist' to
    make the code more efficient
  • 'covPCA' now allows permutation tests to check if pairwise
    distances between covariance matrices are significant and reports rownames for two-group case
  • removed unnecessary complicated check for empty groups by simply using function 'factor' in 'covW' and 'typprobClass'
  • white space formatting in code
  • added option "mshape" to function 'orp' to specify a custom pole for projection
  • made function 'fx', 'PCAcrova' and 'calcTang_U'
    interntal-only by prefixing function name with '.'
  • removed unnecessary sinus calculation in 'angle.calc'
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