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Welcome to the amplicon_pipeline wiki

In these pages you will find details on each module.

Tutorials

• How to write a module

List of the modules:

• Demultiplexers
  • Double Tag Demultiplexing (DTD)
• Paired-end joiners
  • Pandaseq joining
  • Casper
  • Mergepair vsearch
• Chimeras
  • Chimera Vsearch
• Clustering
  • Clustering vsearch
  • SWARM v2
• Assignment
  • vsearch global
• Utils
  • Dereplication
  • Basic FASTA filtering
  • Basic OTU filtering
  • FASTA merging
  • FASTQ to FASTA