yFiles Jupyter Graphs for Neo4j

Easily visualize a Neo4j cypher query as a graph in a Jupyter Notebook.

This packages provides an easy-to-use interface to the yFiles Graphs for Jupyter widget to directly visualize cypher queries.

Installation

Just install it from the Python Package Index

pip install yfiles_jupyter_graphs_for_neo4j

or see README_DEV.md to build it yourself.

Usage

from yfiles_jupyter_graphs_for_neo4j import Neo4jGraphWidget
from neo4j import GraphDatabase

NEO4J_URI      = "neo4j+ssc://demo.neo4jlabs.com" 
NEO4J_USERNAME = "movies"
NEO4J_PASSWORD = "movies"
driver = GraphDatabase.driver(uri = NEO4J_URI, auth = (NEO4J_USERNAME, NEO4J_PASSWORD), database = 'movies')

g = Neo4jGraphWidget(driver)

g.show_cypher("MATCH (s)-[r]->(t) RETURN s,r,t LIMIT 20")

See the basic example notebook for a running example.

Supported Environments

The widget uses yFiles Graphs for Jupyter at its core, and therefore runs in any environment that is supported by it, see supported environments.

Documentation

The main class Neo4jGraphWidget provides the following API:

Constructor

• Neo4jGraphWidget: Creates a new class instance with the following arguments

Argument	Description	Default
driver	The neo4j driver that is used to execute cypher queries.	None
widget_layout	Can be used to specify general widget appearance through css attributes. See ipywidget's layout for more information.	None
overview_enabled	Enable graph overview component. Default behaviour depends on cell width.	None
layout	Can be used to specify a general default node and edge layout. Available algorithms are: "circular", "hierarchic", "organic", "interactive_organic_layout", "orthogonal", "radial", "tree", "map", "orthogonal_edge_router", "organic_edge_router"	organic

Methods

• show_cypher(cypher, layout=None, **kwargs)
  • cypher: The cypher query that should be visualized.
  • layout: The graph layout that is used. This overwrites the general layout in this specific graph instance. The following arguments are supported:
    • hierarchic
    • organic
    • interactive_organic_layout
    • circular
    • orthogonal
    • tree
    • radial
    • map
    • orthogonal_edge_router
    • organic_edge_router
  • **kwargs: Additional parameters that should be passed to the cypher query (e.g., see the selection example).

The default behavior is to only show the nodes and relationships returned by the cypher query. This can be changed to autocomplete relationships like in neo4j browser:

• set_autocomplete_relationships(autocomplete_relationships): Sets whether to autocomplete relationships in the graph or not.

The cypher queries are executed by the provided Neo4j driver. If you have not specified a driver when instantiating the class, you can set a driver afterward:

• set_driver(driver): Sets the given driver and uses this to send cypher queries to Databases.
• get_driver(): Returns the current driver.

The graph visualization can be adjusted by adding configurations to each node label or edge type with the following functions:

• add_node_configuration(label, **kwargs)

  • label: The node label for which this configuration should be used.
  • **kwargs: Visualization configuration for the given node label. The following arguments are supported:
    • text: The text that displayed at the node. By default, the node's label is used.
    • color: A convenience color binding for the node (see also styles argument).
    • size: The size of the node.
    • styles: A dictionary that may contain the following attributes color, shape (one of 'ellipse', ' hexagon', 'hexagon2', 'octagon', 'pill', 'rectangle', 'round-rectangle' or 'triangle'), image.
    • property: Allows to specify additional properties on the node, which may be bound by other bindings.
    • type: Defines a specific "type" for the node as described in yFiles Graphs for Jupyter which affects the automatic positioning of nodes (same "type"s are preferred to be placed next to each other).
    • parent_configuration: Configure grouping for this node label. See grouping.ipynb for examples.

• add_relationship_configuration(type, **kwargs)

  • type: The relationship type for which this configuration should be used.
  • **kwargs: Visualization configuration for the given relationship type. The following arguments are supported:
    • text: The text that displayed at the relationship. By default, the relationship's type is used.
    • color: The relationship's color.
    • thickness_factor: The relationship's stroke thickness factor. By default, 1.
    • property: Allows to specify additional properties on the relationship, which may be bound by other bindings.

• add_parent_relationship_configuration(type, reverse=False)

  • type: The relationship type that should be visualized as node grouping hierarchy instead of the actual relationship.
  • reverse: By default the target node is considered as parent. This can be reverted with this argument.

To remove a configuration use the following functions:

• del_node_configuration(type): Deletes configuration for the given node label.
• del_relationship_configurations(type): Deletes configuration for the given relationship type.
• del_parent_relationship_configuration(type): Deletes configuration for the given parent relationship type.

You can select nodes and relationships to retrieve their ids. For example, you can use these ids in new cypher queries by providing them as parameter to show_cypher as shown in the selection example.

• get_selected_node_ids(widget=None): Returns an Array of node ids

  • widget: The widget that is used to select nodes from. If None is specified, the most recently shown widget is used.

• get_selected_relationship_ids(widget=None): Returns an Array of relationship ids

  • widget: The widget that is used to select edges from. If None is specified, the most recently shown widget is used.

How configuration bindings are resolved

The configuration bindings (see add_node_configuration or add_relationship_configuration) are resolved as follows:

If the configuration binding is a string, the package first tries to resolve it against the item's properties and uses the property value if available. If there is no property with the given key, the string value itself is used as a constant binding.

In case you want to create a constant string value as binding, which also happens to be a property key, use a binding function with a constant string as return value instead.

If the configuration binding is a function, the return value of the function is used as value for the respective configuration.

yFiles Graphs for Jupyter

The graph visualization is provided by yFiles Graphs for Jupyter, a versatile graph visualization widget for Jupyter Notebooks.

It can import and visualize graphs from various popular Python packages (e.g. NetworkX, PyGraphviz, igraph) or just structured node and edge lists.

And provides a rich set of visualization options to bring your data to life (see the example notebooks).

Feature Highlights

Heatmap visualization	Geospatial data visualization
Data-driven item visualization	Group items

For a detailed feature guide, check out the main widget example notebooks

Code of Conduct

This project and everyone participating in it is governed by the Code of Conduct. By participating, you are expected to uphold this code. Please report unacceptable behavior to [email protected].

Feedback

This widget is by no means perfect. If you find something is not working as expected we are glad to receive an issue report from you. Please make sure to search for existing issues first and check if the issue is not an unsupported feature or known issue. If you did not find anything related, report a new issue with necessary information. Please also provide a clear and descriptive title and stick to the issue templates. See issues.

Dependencies

• yFiles Graphs for Jupyter

License

See LICENSE file.