Update flatpak dependencies #984

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Job	Run time
version	3s
build-ps4	5m 42s
build-macos (IntelChip)	6m 33s
build-switch (opengl)	4m 17s
build-flatpak (x86_64, gl)	16m 0s
build-macos (AppleSilicon)	7m 24s
build-switch (deko3d)	4m 20s
build-flatpak (aarch64, gl)	2m 2s
build-psv	19m 23s
build-macos (Universal)	53s
build-flatpak (aarch64, gles2)	2m 3s
build-win (x86_64, gl)	10m 56s
build-win (x86_64, d3d)	10m 48s
build-win (x86, gl)	9m 35s
build-win (x86, d3d)	9m 55s
release	14s
	1h 50m 8s