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Merge pull request #120 from wurmlab/dev
Small, small updates like: add -f option, use faster jq instead of json, fix typos and pub url.
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@@ -1,4 +1,7 @@ | ||
source 'http://rubygems.org' | ||
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gemspec | ||
gem 'codeclimate-test-reporter', group: :test, require: nil | ||
group :test do | ||
gem "simplecov" | ||
gem "codeclimate-test-reporter", "~> 1.0.0" | ||
end |
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@@ -1,32 +1,29 @@ | ||
# coding: utf-8 | ||
lib = File.expand_path('../lib', __FILE__) | ||
$LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib) | ||
require 'genevalidator/version' | ||
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Gem::Specification.new do |s| | ||
# meta | ||
s.name = 'genevalidator' | ||
s.version = GeneValidator::VERSION | ||
s.version = GeneValidator::VERSION | ||
s.authors = ['Monica Dragan', 'Ismail Moghul', 'Anurag Priyam', | ||
'Yannick Wurm'] | ||
s.email = '[email protected]' | ||
s.homepage = 'https://wurmlab.github.io/tools/genevalidator/' | ||
s.license = 'AGPL' | ||
s.summary = 'Identifying problems with gene predictions.' | ||
s.description = 'The tool validates the input predicted genes and provides' \ | ||
' useful information (length validation, gene merge'\ | ||
' useful information (length validation, gene merge' \ | ||
' validation, sequence duplication checking, ORF finding)' \ | ||
' based on the similarities to genes in public databases.' | ||
s.required_ruby_version = '>= 2.1.0' | ||
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s.required_ruby_version = '>= 2.0.0' | ||
s.add_development_dependency 'bundler', '~> 1.6' | ||
s.add_development_dependency 'minitest', '~> 5.10' | ||
s.add_development_dependency 'rake', '~>10.3' | ||
s.add_development_dependency 'yard', '~> 0.9.11' | ||
s.add_development_dependency 'codeclimate-test-reporter', '~> 0.4', '>= 0.4.7' | ||
s.add_development_dependency('minitest', '~> 5.4') | ||
s.add_dependency('bio', '~> 1.4') | ||
s.add_dependency('bio-blastxmlparser', '~>2.0') | ||
s.add_dependency('statsample', '2.0.1') | ||
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s.add_dependency 'bio', '~> 1.4' | ||
s.add_dependency 'bio-blastxmlparser', '~>2.0' | ||
s.add_dependency 'statsample', '2.0.1' | ||
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s.files = `git ls-files -z`.split("\x0") | ||
s.executables = s.files.grep(%r{^bin/}) { |f| File.basename(f) } | ||
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@@ -35,15 +32,19 @@ Gem::Specification.new do |s| | |
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s.post_install_message = <<INFO | ||
------------------------------------------------------------------------ | ||
---------------------------------------------------------------------------- | ||
Thank you for validating your gene predictions with GeneValidator! | ||
To launch GeneValidator execute 'genevalidator' from command line. | ||
$ genevalidator [options] FASTA_FILE | ||
Visit https://github.com/wurmlab/GeneValidator for more information. | ||
------------------------------------------------------------------------ | ||
Visit https://wurmlab.github.io/tools/genevalidator/ for more information. | ||
Note there is an also online demo server at: | ||
http://genevalidator.sbcs.qmul.ac.uk | ||
---------------------------------------------------------------------------- | ||
INFO | ||
end |
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@@ -1,3 +1,3 @@ | ||
module GeneValidator | ||
VERSION = '1.6.12' | ||
VERSION = '1.7.2'.freeze | ||
end |
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@@ -1,2 +1,2 @@ | ||
require 'codeclimate-test-reporter' | ||
CodeClimate::TestReporter.start | ||
require "simplecov" | ||
SimpleCov.start |