Remove upload items from queue if they are for files no longer in the…

…ir set (#55)

* Include error message in log output when we abort client requests.

go.mod

@@ -10,7 +10,7 @@ require (
 	github.com/gammazero/workerpool v1.1.3
 	github.com/gin-gonic/gin v1.9.1
 	github.com/go-ldap/ldap/v3 v3.4.4
-	github.com/go-resty/resty/v2 v2.7.0
+	github.com/go-resty/resty/v2 v2.10.0
 	github.com/hashicorp/go-multierror v1.1.1
 	github.com/inconshreveable/log15 v3.0.0-testing.5+incompatible
 	github.com/moby/sys/mountinfo v0.6.2
@@ -21,7 +21,7 @@ require (
 	github.com/smartystreets/goconvey v1.7.2
 	github.com/spf13/cobra v1.7.0
 	github.com/ugorji/go/codec v1.2.11
-	github.com/wtsi-hgi/go-authserver v1.1.0
+	github.com/wtsi-hgi/go-authserver v1.2.1
 	github.com/wtsi-hgi/grand v1.0.0
 	github.com/wtsi-npg/extendo/v2 v2.6.1
 	github.com/wtsi-npg/logshim v1.3.0
@@ -33,7 +33,7 @@ require (
 )
 
 require (
-	cloud.google.com/go/compute v1.20.0 // indirect
+	cloud.google.com/go/compute v1.20.1 // indirect
 	cloud.google.com/go/compute/metadata v0.2.3 // indirect
 	code.cloudfoundry.org/bytefmt v0.0.0-20230406175530-3579ae0680eb // indirect
 	github.com/Azure/go-ntlmssp v0.0.0-20221128193559-754e69321358 // indirect
@@ -43,8 +43,9 @@ require (
 	github.com/VividCortex/ewma v1.2.0 // indirect
 	github.com/alexflint/go-filemutex v1.2.0 // indirect
 	github.com/appleboy/gin-jwt/v2 v2.9.1 // indirect
-	github.com/bytedance/sonic v1.9.1 // indirect
-	github.com/chenzhuoyu/base64x v0.0.0-20221115062448-fe3a3abad311 // indirect
+	github.com/bytedance/sonic v1.10.2 // indirect
+	github.com/chenzhuoyu/base64x v0.0.0-20230717121745-296ad89f973d // indirect
+	github.com/chenzhuoyu/iasm v0.9.1 // indirect
 	github.com/creasty/defaults v1.7.0 // indirect
 	github.com/davecgh/go-spew v1.1.1 // indirect
 	github.com/decred/dcrd/dcrec/secp256k1/v4 v4.2.0 // indirect
@@ -54,7 +55,7 @@ require (
 	github.com/docker/go-units v0.5.0 // indirect
 	github.com/docker/spdystream v0.2.0 // indirect
 	github.com/fanatic/go-infoblox v0.0.0-20190709161059-e25f3820238c // indirect
-	github.com/gabriel-vasile/mimetype v1.4.2 // indirect
+	github.com/gabriel-vasile/mimetype v1.4.3 // indirect
 	github.com/gammazero/deque v0.2.1 // indirect
 	github.com/ghodss/yaml v1.0.0 // indirect
 	github.com/gin-contrib/secure v0.0.1 // indirect
@@ -64,7 +65,7 @@ require (
 	github.com/go-ole/go-ole v1.2.6 // indirect
 	github.com/go-playground/locales v0.14.1 // indirect
 	github.com/go-playground/universal-translator v0.18.1 // indirect
-	github.com/go-playground/validator/v10 v10.14.0 // indirect
+	github.com/go-playground/validator/v10 v10.16.0 // indirect
 	github.com/go-stack/stack v1.8.1 // indirect
 	github.com/goccy/go-json v0.10.2 // indirect
 	github.com/gofrs/uuid v4.4.0+incompatible // indirect
@@ -78,8 +79,8 @@ require (
 	github.com/gophercloud/gophercloud v1.4.0 // indirect
 	github.com/gophercloud/utils v0.0.0-20230523080330-de873b9cf00d // indirect
 	github.com/gopherjs/gopherjs v1.17.2 // indirect
-	github.com/gorilla/securecookie v1.1.1 // indirect
-	github.com/gorilla/sessions v1.2.1 // indirect
+	github.com/gorilla/securecookie v1.1.2 // indirect
+	github.com/gorilla/sessions v1.2.2 // indirect
 	github.com/gorilla/websocket v1.5.0 // indirect
 	github.com/grafov/bcast v0.0.0-20190217190352-1447f067e08d // indirect
 	github.com/hanwen/go-fuse/v2 v2.3.0 // indirect
@@ -94,17 +95,17 @@ require (
 	github.com/json-iterator/go v1.1.12 // indirect
 	github.com/jtolds/gls v4.20.0+incompatible // indirect
 	github.com/klauspost/compress v1.16.5 // indirect
-	github.com/klauspost/cpuid/v2 v2.2.4 // indirect
+	github.com/klauspost/cpuid/v2 v2.2.6 // indirect
 	github.com/kr/fs v0.1.0 // indirect
 	github.com/leodido/go-urn v1.2.4 // indirect
 	github.com/lestrrat-go/backoff/v2 v2.0.8 // indirect
-	github.com/lestrrat-go/blackmagic v1.0.1 // indirect
+	github.com/lestrrat-go/blackmagic v1.0.2 // indirect
 	github.com/lestrrat-go/httpcc v1.0.1 // indirect
 	github.com/lestrrat-go/iter v1.0.2 // indirect
 	github.com/lestrrat-go/jwx v1.2.26 // indirect
 	github.com/lestrrat-go/option v1.0.1 // indirect
 	github.com/mattn/go-colorable v0.1.13 // indirect
-	github.com/mattn/go-isatty v0.0.19 // indirect
+	github.com/mattn/go-isatty v0.0.20 // indirect
 	github.com/mattn/go-runewidth v0.0.14 // indirect
 	github.com/minio/md5-simd v1.1.2 // indirect
 	github.com/minio/minio-go/v7 v7.0.55 // indirect
@@ -117,7 +118,7 @@ require (
 	github.com/opencontainers/go-digest v1.0.0 // indirect
 	github.com/opencontainers/image-spec v1.1.0-rc3 // indirect
 	github.com/patrickmn/go-cache v2.1.0+incompatible // indirect
-	github.com/pelletier/go-toml/v2 v2.0.8 // indirect
+	github.com/pelletier/go-toml/v2 v2.1.0 // indirect
 	github.com/petermattis/goid v0.0.0-20230518223814-80aa455d8761 // indirect
 	github.com/pkg/errors v0.9.1 // indirect
 	github.com/pkg/sftp v1.13.5 // indirect
@@ -135,18 +136,18 @@ require (
 	github.com/twitchyliquid64/golang-asm v0.15.1 // indirect
 	github.com/wtsi-hgi/godirwalk v1.18.1 // indirect
 	github.com/yusufpapurcu/wmi v1.2.3 // indirect
-	golang.org/x/arch v0.3.0 // indirect
+	golang.org/x/arch v0.6.0 // indirect
 	golang.org/x/crypto v0.15.0 // indirect
 	golang.org/x/mod v0.10.0 // indirect
 	golang.org/x/net v0.18.0 // indirect
-	golang.org/x/oauth2 v0.8.0 // indirect
-	golang.org/x/sync v0.2.0 // indirect
+	golang.org/x/oauth2 v0.14.0 // indirect
+	golang.org/x/sync v0.5.0 // indirect
 	golang.org/x/sys v0.14.0 // indirect
 	golang.org/x/text v0.14.0 // indirect
 	golang.org/x/time v0.3.0 // indirect
 	golang.org/x/tools v0.9.2 // indirect
-	google.golang.org/appengine v1.6.7 // indirect
-	google.golang.org/protobuf v1.30.0 // indirect
+	google.golang.org/appengine v1.6.8 // indirect
+	google.golang.org/protobuf v1.31.0 // indirect
 	gopkg.in/inf.v0 v0.9.1 // indirect
 	gopkg.in/ini.v1 v1.67.0 // indirect
 	gopkg.in/tylerb/graceful.v1 v1.2.15 // indirect