fixed VIP installation problems related to scikit-image, general improvements for recenter functions and docstrings , PEP8 imports #332
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: ci | |
| on: [push, pull_request] | |
| jobs: | |
| no_object_checks: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| group: [1, 2, 3] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install flake8 pytest pytest-cov sphinx | |
| if [ -f requirements.txt ]; then pip install -r requirements-dev.txt; fi | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test with pytest | |
| run: | | |
| pytest tests/pre_3_10 --cov=vip_hci/ --cov-report=xml --splits 3 --group ${{ matrix.group }} | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| objects_check: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.10", "3.11"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install pre-commit pytest pytest-cov sphinx | |
| if [ -f requirements.txt ]; then pip install -r requirements-dev.txt; fi | |
| - name: Verify files with pre-commit | |
| run: | | |
| # Setup pre-commit hooks | |
| pre-commit clean | |
| pre-commit install --hook-type pre-merge-commit | |
| pre-commit install --hook-type pre-push | |
| pre-commit install --hook-type post-rewrite | |
| pre-commit install-hooks | |
| pre-commit install | |
| # Run pre-commit hooks | |
| pre-commit run --files vip_hci/objects/*.py | |
| - name: Test with pytest | |
| run: | | |
| pytest tests/post_3_10 --cov=vip_hci/objects/ --cov-report=xml | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 |