Notebook files describing analyses in the ANANSE paper (Xu et al. 2021)
- model_training.ipynb - overview of training of binding prediction model
- download_and_benchmark_grns.ipynb - GRN benchmarking using different references
- gtex_grn_with_arboreto.ipynb - GRN inference on GTEx using GRNBoost2
- figure3_ananse_binding.ipynb - code to create Figure 3