GitHub - uw-loci/dashboardsforMM: Jupyter Dashboards for MicroManager OpenScan-TimeTagger Operation and SmartMicroscope Modules

Micromanager OpenScan supported FLIM collection and processing from Python

Pycromanager- Demo test A1:0523 Local Max Local Min calculation on demo-camera configuration A1:0701 Pycromanager tests
Pycromanager: CAMM a. PyImageJ: Stitching support b. QuPath: Annotation and Pyramid-tiff support c. Denoising, Super Resolution Model support d. Autofocus e. Multimodal support B2: CAMM
Swabian - Demo test C1: Swabian on OWS C2: read Swabian-headers C3: Swabian FileReaders and FLIM C4: Custom Measurements C5: run swabian on OWS2 and sync C5: Run swabian
Dashboards : Voila and Panel D1: voila examples D2: voila Pycromanager Dashboards D3: panel examples D4: panel Pycromanager dashboards and tabs D6: swabian real time dashboard on OWS2, PyMMCore D6: pycromanager display, roi, swabian FR dash

dash env: conda install python conda install jupyterlab pip install pycromanager conda install panel conda install nodejs

Name		Name	Last commit message	Last commit date
Latest commit History 85 Commits
TimeTagger_API_reference		TimeTagger_API_reference
.gitignore		.gitignore
A1_20230523_localmax.ipynb		A1_20230523_localmax.ipynb
A1_20230701_pycromanager.ipynb		A1_20230701_pycromanager.ipynb
B2_CAMM.ipynb		B2_CAMM.ipynb
C1_OWS_Swabian.ipynb		C1_OWS_Swabian.ipynb
C2_read_swabian_headers.ipynb		C2_read_swabian_headers.ipynb
C3_Swabian_FLIM_FR.ipynb		C3_Swabian_FLIM_FR.ipynb
C4_Swabian_Custom_measurements.ipynb		C4_Swabian_Custom_measurements.ipynb
C5_Swabian_run.ipynb		C5_Swabian_run.ipynb
C5_Swabian_run_OWS2_Sync.ipynb		C5_Swabian_run_OWS2_Sync.ipynb
D1_voila_dash_examples.ipynb		D1_voila_dash_examples.ipynb
D2_voila_pym_dash.ipynb		D2_voila_pym_dash.ipynb
D3_panel_dash_ex.ipynb		D3_panel_dash_ex.ipynb
D4_panel_pym_dash_trial.ipynb		D4_panel_pym_dash_trial.ipynb
D6_MM_dash.ipynb		D6_MM_dash.ipynb
D6_MM_dash_worked_OWS2.ipynb		D6_MM_dash_worked_OWS2.ipynb
D7_bokeh_interact.ipynb		D7_bokeh_interact.ipynb
Readme.md		Readme.md
swab_temp.ipynb		swab_temp.ipynb