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| --- | ||
| site: freiburg | ||
| tags: [tools] | ||
| title: UseGalaxy.eu Tool Updates for 2023-12-03 | ||
| supporters: | ||
| - denbi | ||
| - elixir | ||
| --- | ||
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| On 2023-12-03, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in [Jenkins Build #420](https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#420/) | ||
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| ## Filter and Sort | ||
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| - sample_seqs was updated to [bdaefd241921](https://toolshed.g2.bx.psu.edu/view/peterjc/sample_seqs/bdaefd241921) | ||
| - seq_filter_by_id was updated to [83a19df00eab](https://toolshed.g2.bx.psu.edu/view/peterjc/seq_filter_by_id/83a19df00eab) | ||
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| ## Data and Metadata Management | ||
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| - eml2eal was updated to [3d14d6a4ef7c](https://toolshed.g2.bx.psu.edu/view/ecology/eml2eal/3d14d6a4ef7c) | ||
| - makeeml was updated to [8a697f446051](https://toolshed.g2.bx.psu.edu/view/ecology/makeeml/8a697f446051) | ||
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| ## Metabolomics | ||
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| - matchms_formatter was updated to [86a45ba3d3f2](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_formatter/86a45ba3d3f2) | ||
| - matchms_metadata_merge was updated to [caf007467c84](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_metadata_merge/caf007467c84) | ||
| - matchms_subsetting was updated to [aa2e912f9dc2](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_subsetting/aa2e912f9dc2) | ||
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| ## QIIME 2 | ||
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| - qiime2__deblur__denoise_16S was updated to [2572fc0f88f2](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2) | ||
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| ## Proteomics | ||
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| - diann was updated to [bf0728e000cd](https://toolshed.g2.bx.psu.edu/view/galaxyp/diann/bf0728e000cd) | ||
| - openms_openpepxl was updated to [40cc19c0dbd6](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/40cc19c0dbd6) | ||
| - openms_openpepxl was updated to [a2a842b00f9c](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/a2a842b00f9c) | ||
| - openms_openpepxl was updated to [fc36cfd19834](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/fc36cfd19834) | ||
| - openms_percolatoradapter was updated to [0fc9ae55bcfc](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/0fc9ae55bcfc) | ||
| - openms_percolatoradapter was updated to [e7881a82b56d](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/e7881a82b56d) | ||
| - openms_xfdr was updated to [81402a5e4173](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/81402a5e4173) | ||
| - openms_xfdr was updated to [9a6e3bb0f358](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/9a6e3bb0f358) | ||
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| ## Nanopore | ||
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| - nanopolish_eventalign was updated to [3b6f94fc7e1d](https://toolshed.g2.bx.psu.edu/view/bgruening/nanopolish_eventalign/3b6f94fc7e1d) | ||
| - nanopolish_methylation was updated to [90a922f32523](https://toolshed.g2.bx.psu.edu/view/bgruening/nanopolish_methylation/90a922f32523) | ||
| - nanopolish_polya was updated to [4857d5bcce52](https://toolshed.g2.bx.psu.edu/view/bgruening/nanopolish_polya/4857d5bcce52) | ||
| - nanopolish_variants was updated to [bec636361cfd](https://toolshed.g2.bx.psu.edu/view/bgruening/nanopolish_variants/bec636361cfd) | ||
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| ## Assembly | ||
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| - getorganelle was updated to [7348b69e5109](https://toolshed.g2.bx.psu.edu/view/iuc/getorganelle/7348b69e5109) | ||
| - megahit was updated to [a96f3ad4e0d8](https://toolshed.g2.bx.psu.edu/view/iuc/megahit/a96f3ad4e0d8) | ||
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| ## Phylogenetics | ||
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| - hyphy_prime was updated to [4072360120e4](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_prime/4072360120e4) | ||
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| ## Single-cell | ||
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| - baredsc_1d was updated to [0e70b2dfe4be](https://toolshed.g2.bx.psu.edu/view/iuc/baredsc_1d/0e70b2dfe4be) | ||
| - baredsc_2d was updated to [344c2af50552](https://toolshed.g2.bx.psu.edu/view/iuc/baredsc_2d/344c2af50552) | ||
| - baredsc_combine_1d was updated to [b13d3e4c48e1](https://toolshed.g2.bx.psu.edu/view/iuc/baredsc_combine_1d/b13d3e4c48e1) | ||
| - baredsc_combine_2d was updated to [1d77986f9ddc](https://toolshed.g2.bx.psu.edu/view/iuc/baredsc_combine_2d/1d77986f9ddc) | ||
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| ## None | ||
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| - data_manager_diamond_database_builder was updated to [4a08b7b76b78](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78) | ||
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| ## Annotation | ||
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| - braker3 was updated to [5460380cc057](https://toolshed.g2.bx.psu.edu/view/genouest/braker3/5460380cc057) | ||
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| ## Spatial Omics | ||
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| - mesmer was updated to [c60b810d570d](https://toolshed.g2.bx.psu.edu/view/goeckslab/mesmer/c60b810d570d) | ||
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| ## FASTA/FASTQ | ||
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| - seq_filter_by_mapping was updated to [566e456371c6](https://toolshed.g2.bx.psu.edu/view/peterjc/seq_filter_by_mapping/566e456371c6) | ||
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