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phenotrex release 0.4

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@VarIr VarIr released this 12 Mar 09:27
· 75 commits to master since this release
204f8b1

phenotrex 0.4 contains a number of new features, improvements, and changes,
including the following:

  • Trait prediction directly from sequences (FASTA) with automatic intermediate gene calling (by prodigal) and orthologous group assignment (by deepnog)
  • Interpretable features (by shap) incl. plots: Which orthologous groups contribute to predictions?
  • Vastly increased test coverage
  • Switch to GPLv3
  • Fine ascii art