phenotrex
0.4 contains a number of new features, improvements, and changes,
including the following:
- Trait prediction directly from sequences (FASTA) with automatic intermediate gene calling (by
prodigal
) and orthologous group assignment (bydeepnog
) - Interpretable features (by
shap
) incl. plots: Which orthologous groups contribute to predictions? - Vastly increased test coverage
- Switch to GPLv3
- Fine ascii art