Merge pull request #78 from HelinWei-NOAA/hr2_land1

land surface upgrades for HR2

physics/GFS_debug.F90

@@ -488,6 +488,10 @@ subroutine GFS_diagtoscreen_run (Model, Statein, Stateout, Sfcprop, Coupling,
                      call print_var(mpirank, omprank, blkno, Grid%xlat_d, Grid%xlon_d, 'Sfcprop%vtype_save', Sfcprop%vtype_save)
                      call print_var(mpirank, omprank, blkno, Grid%xlat_d, Grid%xlon_d, 'Sfcprop%stype'     , Sfcprop%stype)
                      call print_var(mpirank, omprank, blkno, Grid%xlat_d, Grid%xlon_d, 'Sfcprop%stype_save', Sfcprop%stype_save)
+
+                     call print_var(mpirank, omprank, blkno, Grid%xlat_d, Grid%xlon_d, 'Sfcprop%scolor'     , Sfcprop%scolor)
+                     call print_var(mpirank, omprank, blkno, Grid%xlat_d, Grid%xlon_d, 'Sfcprop%scolore_save', Sfcprop%scolor_save)
+
                      call print_var(mpirank, omprank, blkno, Grid%xlat_d, Grid%xlon_d, 'Sfcprop%uustar'    , Sfcprop%uustar)
                      call print_var(mpirank, omprank, blkno, Grid%xlat_d, Grid%xlon_d, 'Sfcprop%oro'       , Sfcprop%oro)
                      call print_var(mpirank, omprank, blkno, Grid%xlat_d, Grid%xlon_d, 'Sfcprop%oro_uf'    , Sfcprop%oro_uf)
@@ -1531,7 +1535,7 @@ module GFS_checkland
 !! \htmlinclude GFS_checkland_run.html
 !!
       subroutine GFS_checkland_run (me, master, blkno, im, kdt, iter, flag_iter, flag_guess, &
-              flag_init, flag_restart, frac_grid, isot, ivegsrc, stype, vtype, slope,        &
+              flag_init, flag_restart, frac_grid, isot, ivegsrc, stype,scolor, vtype, slope,        &
               dry, icy, wet, lake, ocean, oceanfrac, landfrac, lakefrac, slmsk, islmsk,      &
               zorl, zorlw, zorll, zorli, fice, errmsg, errflg )
 
@@ -1554,6 +1558,8 @@ subroutine GFS_checkland_run (me, master, blkno, im, kdt, iter, flag_iter, flag_
          integer,          intent(in   ) :: isot
          integer,          intent(in   ) :: ivegsrc
          integer,          intent(in   ) :: stype(:)
+         integer,          intent(in   ) :: scolor(:)
+
          integer,          intent(in   ) :: vtype(:)
          integer,          intent(in   ) :: slope(:)
          logical,          intent(in   ) :: dry(:)
@@ -1598,6 +1604,8 @@ subroutine GFS_checkland_run (me, master, blkno, im, kdt, iter, flag_iter, flag_
              write(0,'(a,2i5,1x,1x,l)') 'YYY: i, blk, flag_iter(i)  :', i, blkno, flag_iter(i)
              write(0,'(a,2i5,1x,1x,l)') 'YYY: i, blk, flag_guess(i) :', i, blkno, flag_guess(i)
              write(0,'(a,2i5,1x,e16.7)')'YYY: i, blk, stype(i)      :', i, blkno, stype(i)
+
+             write(0,'(a,2i5,1x,e16.7)')'YYY: i, blk, scolor(i)      :', i, blkno, scolor(i)
              write(0,'(a,2i5,1x,e16.7)')'YYY: i, blk, vtype(i)      :', i, blkno, vtype(i)
              write(0,'(a,2i5,1x,e16.7)')'YYY: i, blk, slope(i)      :', i, blkno, slope(i)
              write(0,'(a,2i5,1x,1x,l)') 'YYY: i, blk, dry(i)        :', i, blkno, dry(i)

physics/GFS_debug.meta

@@ -543,6 +543,13 @@
   dimensions = (horizontal_loop_extent)
   type = integer
   intent = in
+[scolor]
+  standard_name = soil_color_classification
+  long_name = soil color for lsm
+  units = index
+  dimensions = (horizontal_loop_extent)
+  type = integer
+  intent = in
 [vtype]
   standard_name = vegetation_type_classification
   long_name = vegetation type for lsm

physics/GFS_phys_time_vary.fv3.F90

@@ -36,7 +36,8 @@ module GFS_phys_time_vary
       use set_soilveg_mod, only: set_soilveg
 
       ! --- needed for Noah MP init
-      use noahmp_tables, only: laim_table,saim_table,sla_table,      &
+      use noahmp_tables, only: read_mp_table_parameters,             &
+                               laim_table,saim_table,sla_table,      &
                                bexp_table,smcmax_table,smcwlt_table, &
                                dwsat_table,dksat_table,psisat_table, &
                                isurban_table,isbarren_table,         &
@@ -172,6 +173,7 @@ subroutine GFS_phys_time_vary_init (
          real(kind_phys),      intent(in)    :: canopy(:)
          real(kind_phys),      intent(in)    :: tg3(:)
          integer,              intent(in)    :: stype(:)
+
          real(kind_phys),      intent(in)    :: con_t0c
 
          integer,              intent(in)    :: nthrds
@@ -294,6 +296,10 @@ subroutine GFS_phys_time_vary_init (
 !> - Initialize soil vegetation (needed for sncovr calculation further down)
          call set_soilveg(me, isot, ivegsrc, nlunit, errmsg, errflg)
 
+!$OMP section
+!> - read in NoahMP table (needed for NoahMP init)
+         call read_mp_table_parameters(errmsg, errflg)
+
 !$OMP end sections
 
 ! Need an OpenMP barrier here (implicit in "end sections")
@@ -469,8 +475,8 @@ subroutine GFS_phys_time_vary_init (
 !$OMP          shared(isbarren_table,isice_table,isurban_table)         &
 !$omp          shared(iswater_table,laim_table,sla_table,bexp_table)    &
 !$omp          shared(stc,smc,slc,tg3,snowxy,tsnoxy,snicexy,snliqxy)    &
-!$omp          shared(zsnsoxy,STYPE,SMCMAX_TABLE,SMCWLT_TABLE,zs,dzs)   &
-!$omp          shared(DWSAT_TABLE,DKSAT_TABLE,PSISAT_TABLE,smoiseq)     &
+!$omp          shared(zsnsoxy,stype,smcmax_table,smcwlt_table,zs,dzs)   & 
+!$omp          shared(dwsat_table,dksat_table,psisat_table,smoiseq)     &
 !$OMP          shared(smcwtdxy,deeprechxy,rechxy,errmsg,errflg)         &
 !$OMP          private(vegtyp,masslai,masssai,snd,dzsno,dzsnso,isnow)   &
 !$OMP          private(soiltyp,bexp,smcmax,smcwlt,dwsat,dksat,psisat,ddz)
@@ -742,7 +748,7 @@ subroutine GFS_phys_time_vary_timestep_init (
             kice, ialb, isot, ivegsrc, input_nml_file, use_ufo, nst_anl, frac_grid, fhcyc, phour,   &
             lakefrac, min_seaice, min_lakeice, smc, slc, stc, smois, sh2o, tslb, tiice, tg3, tref,  &
             tsfc, tsfco, tisfc, hice, fice, facsf, facwf, alvsf, alvwf, alnsf, alnwf, zorli, zorll, &
-            zorlo, weasd, slope, snoalb, canopy, vfrac, vtype, stype, shdmin, shdmax, snowd,        &
+            zorlo, weasd, slope, snoalb, canopy, vfrac, vtype, stype,scolor, shdmin, shdmax, snowd, &
             cv, cvb, cvt, oro, oro_uf, xlat_d, xlon_d, slmsk, landfrac,                             &
             do_ugwp_v1, jindx1_tau, jindx2_tau, ddy_j1tau, ddy_j2tau, tau_amf, errmsg, errflg)
 
@@ -789,7 +795,7 @@ subroutine GFS_phys_time_vary_timestep_init (
                                       zorli(:), zorll(:), zorlo(:), weasd(:), snoalb(:),             &
                                       canopy(:), vfrac(:), shdmin(:), shdmax(:),                     &
                                       snowd(:), cv(:), cvb(:), cvt(:), oro(:), oro_uf(:), slmsk(:)
-         integer,              intent(inout) :: vtype(:), stype(:), slope(:)
+         integer,              intent(inout) :: vtype(:), stype(:),scolor(:), slope(:) 
 
          character(len=*),     intent(out)   :: errmsg
          integer,              intent(out)   :: errflg
@@ -928,7 +934,7 @@ subroutine GFS_phys_time_vary_timestep_init (
                  frac_grid, smc, slc, stc, smois, sh2o, tslb, tiice, tg3, tref, tsfc,        &
                  tsfco, tisfc, hice, fice, facsf, facwf, alvsf, alvwf, alnsf, alnwf,         &
                  zorli, zorll, zorlo, weasd, slope, snoalb, canopy, vfrac, vtype,            &
-                 stype, shdmin, shdmax, snowd, cv, cvb, cvt, oro, oro_uf,                    &
+                 stype, scolor, shdmin, shdmax, snowd, cv, cvb, cvt, oro, oro_uf,            &
                  xlat_d, xlon_d, slmsk, imap, jmap, errmsg, errflg)
            endif
          endif

physics/GFS_phys_time_vary.fv3.meta

@@ -1794,6 +1794,13 @@
   dimensions = (horizontal_dimension)
   type = integer
   intent = inout
+[scolor]
+  standard_name = soil_color_classification
+  long_name = soil color for lsm
+  units = index
+  dimensions = (horizontal_dimension)
+  type = integer
+  intent = inout
 [shdmin]
   standard_name = min_vegetation_area_fraction
   long_name = min fractional coverage of green vegetation

physics/GFS_surface_generic_post.F90

@@ -21,10 +21,10 @@ module GFS_surface_generic_post
 !> \section arg_table_GFS_surface_generic_post_init Argument Table
 !! \htmlinclude GFS_surface_generic_post_init.html
 !!
-      subroutine GFS_surface_generic_post_init (vtype, stype, slope, vtype_save, stype_save, slope_save, errmsg, errflg)
+      subroutine GFS_surface_generic_post_init (vtype, stype,scolor, slope, vtype_save, stype_save,scolor_save, slope_save, errmsg, errflg)
 
-        integer, dimension(:), intent(in)  :: vtype_save, stype_save, slope_save
-        integer, dimension(:), intent(out) :: vtype, stype, slope
+        integer, dimension(:), intent(in)  :: vtype_save, stype_save,scolor_save, slope_save
+        integer, dimension(:), intent(out) :: vtype, stype, scolor,slope
 
         ! CCPP error handling
         character(len=*), intent(out) :: errmsg
@@ -37,6 +37,7 @@ subroutine GFS_surface_generic_post_init (vtype, stype, slope, vtype_save, stype
         ! Restore vegetation, soil and slope type
         vtype(:) = vtype_save(:)
         stype(:) = stype_save(:)
+        scolor(:) = scolor_save(:)
         slope(:) = slope_save(:)
 
       end subroutine GFS_surface_generic_post_init
@@ -53,7 +54,7 @@ subroutine GFS_surface_generic_post_run (im, cplflx, cplaqm, cplchm, cplwav, cpl
         v10mi_cpl, tsfci_cpl, psurfi_cpl, nnirbmi_cpl, nnirdfi_cpl, nvisbmi_cpl, nvisdfi_cpl, nswsfci_cpl, nswsfc_cpl, nnirbm_cpl,  &
         nnirdf_cpl, nvisbm_cpl, nvisdf_cpl, gflux, evbsa, evcwa, transa, sbsnoa, snowca, snohfa, paha, ep, ecan, etran, edir, waxy, &
         runoff, srunoff, runof, drain, tecan, tetran, tedir, twa, lheatstrg, h0facu, h0facs, zvfun, hflx, evap, hflxq, hffac,       &
-        isot, ivegsrc, islmsk, vtype, stype, slope, vtype_save, stype_save, slope_save, errmsg, errflg)
+        isot, ivegsrc, islmsk, vtype, stype,scolor, slope, vtype_save, stype_save,scolor_save, slope_save, errmsg, errflg)
 
         implicit none
 
@@ -85,8 +86,8 @@ subroutine GFS_surface_generic_post_run (im, cplflx, cplaqm, cplchm, cplwav, cpl
         real(kind=kind_phys), dimension(:), intent(out) :: hflxq
         real(kind=kind_phys), dimension(:), intent(out) :: hffac
 
-        integer, intent(in) :: isot, ivegsrc, islmsk(:), vtype_save(:), stype_save(:), slope_save(:)
-        integer, intent(out) :: vtype(:), stype(:), slope(:)
+        integer, intent(in) :: isot, ivegsrc, islmsk(:), vtype_save(:), stype_save(:),scolor_save(:), slope_save(:)
+        integer, intent(out) :: vtype(:), stype(:),scolor(:), slope(:)
 
         ! CCPP error handling variables
         character(len=*), intent(out) :: errmsg
@@ -274,6 +275,7 @@ subroutine GFS_surface_generic_post_run (im, cplflx, cplaqm, cplchm, cplwav, cpl
         ! Restore vegetation, soil and slope type
         vtype(:) = vtype_save(:)
         stype(:) = stype_save(:)
+        scolor(:) = scolor_save(:)
         slope(:) = slope_save(:)
 
       end subroutine GFS_surface_generic_post_run

physics/GFS_surface_generic_post.meta

@@ -22,6 +22,13 @@
   dimensions = (horizontal_dimension)
   type = integer
   intent = out
+[scolor]
+  standard_name = soil_color_classification
+  long_name = soil color for lsm
+  units = index
+  dimensions = (horizontal_dimension)
+  type = integer
+  intent = out
 [slope]
   standard_name = surface_slope_classification
   long_name = sfc slope type for lsm
@@ -43,6 +50,13 @@
   dimensions = (horizontal_dimension)
   type = integer
   intent = in
+[scolor_save]
+  standard_name = soil_color_classification_save
+  long_name = soil color for lsm save
+  units = index
+  dimensions = (horizontal_dimension)
+  type = integer
+  intent = in
 [slope_save]
   standard_name = surface_slope_classification_save
   long_name = sfc slope type for lsm save
@@ -988,6 +1002,13 @@
   dimensions = (horizontal_loop_extent)
   type = integer
   intent = out
+[scolor]
+  standard_name = soil_color_classification
+  long_name = soil color for lsm
+  units = index
+  dimensions = (horizontal_loop_extent)
+  type = integer
+  intent = out
 [slope]
   standard_name = surface_slope_classification
   long_name = sfc slope type for lsm
@@ -1009,6 +1030,13 @@
   dimensions = (horizontal_loop_extent)
   type = integer
   intent = in
+[scolor_save]
+  standard_name = soil_color_classification_save
+  long_name = soil color for lsm save
+  units = index
+  dimensions = (horizontal_loop_extent)
+  type = integer
+  intent = in
 [slope_save]
   standard_name = surface_slope_classification_save
   long_name = sfc slope type for lsm save

physics/GFS_surface_generic_pre.F90

@@ -21,16 +21,16 @@ module GFS_surface_generic_pre
 !> \section arg_table_GFS_surface_generic_pre_init Argument Table
 !! \htmlinclude GFS_surface_generic_pre_init.html
 !!
-      subroutine GFS_surface_generic_pre_init (nthreads, im, slmsk, isot, ivegsrc, stype, vtype, slope, &
-                                               vtype_save, stype_save, slope_save, errmsg, errflg)
+      subroutine GFS_surface_generic_pre_init (nthreads, im, slmsk, isot, ivegsrc, stype,scolor, vtype, slope, &
+                                               vtype_save, stype_save,scolor_save, slope_save, errmsg, errflg)
 
         implicit none
 
         ! Interface variables
         integer,                       intent(in)    :: nthreads, im, isot, ivegsrc
         real(kind_phys), dimension(:), intent(in)    :: slmsk
-        integer,         dimension(:), intent(inout) :: vtype, stype, slope
-        integer,         dimension(:), intent(out)   :: vtype_save, stype_save, slope_save
+        integer,         dimension(:), intent(inout) :: vtype, stype, scolor,slope
+        integer,         dimension(:), intent(out)   :: vtype_save, stype_save,scolor_save, slope_save
 
         ! CCPP error handling
         character(len=*), intent(out) :: errmsg
@@ -49,22 +49,23 @@ subroutine GFS_surface_generic_pre_init (nthreads, im, slmsk, isot, ivegsrc, sty
         ! Save current values of vegetation, soil and slope type
         vtype_save(:) = vtype(:)
         stype_save(:) = stype(:)
+        scolor_save(:) = scolor(:)
         slope_save(:) = slope(:)
 
-        call update_vegetation_soil_slope_type(nthreads, im, isot, ivegsrc, islmsk, vtype, stype, slope)
+        call update_vegetation_soil_slope_type(nthreads, im, isot, ivegsrc, islmsk, vtype, stype,scolor, slope)
 
       end subroutine GFS_surface_generic_pre_init
 
 !> \section arg_table_GFS_surface_generic_pre_run Argument Table
 !! \htmlinclude GFS_surface_generic_pre_run.html
 !!
-      subroutine GFS_surface_generic_pre_run (nthreads, im, levs, vfrac, islmsk, isot, ivegsrc, stype, vtype, slope, &
+      subroutine GFS_surface_generic_pre_run (nthreads, im, levs, vfrac, islmsk, isot, ivegsrc, stype, scolor,vtype, slope, &
                           prsik_1, prslk_1, tsfc, phil, con_g, sigmaf, work3, zlvl,                        &
                           drain_cpl, dsnow_cpl, rain_cpl, snow_cpl, lndp_type, n_var_lndp, sfc_wts,        &
                           lndp_var_list, lndp_prt_list,                                                    &
                           z01d, zt1d, bexp1d, xlai1d, vegf1d, lndp_vgf,                                    &
                           cplflx, flag_cice, islmsk_cice, slimskin_cpl,                                    &
-                          wind, u1, v1, cnvwind, smcwlt2, smcref2, vtype_save, stype_save, slope_save,     &
+                          wind, u1, v1, cnvwind, smcwlt2, smcref2, vtype_save, stype_save,scolor_save, slope_save,     &
                           errmsg, errflg)
 
         use surface_perturbation,  only: cdfnor
@@ -77,8 +78,8 @@ subroutine GFS_surface_generic_pre_run (nthreads, im, levs, vfrac, islmsk, isot,
 
         real(kind=kind_phys), intent(in) :: con_g
         real(kind=kind_phys), dimension(:), intent(in) :: vfrac, prsik_1, prslk_1
-        integer, dimension(:), intent(inout) :: vtype, stype, slope
-        integer, dimension(:), intent(out)   :: vtype_save(:), stype_save(:), slope_save(:)
+        integer, dimension(:), intent(inout) :: vtype, stype,scolor, slope
+        integer, dimension(:), intent(out)   :: vtype_save(:), stype_save(:),scolor_save(:), slope_save(:)
 
         real(kind=kind_phys), dimension(:), intent(inout) :: tsfc
         real(kind=kind_phys), dimension(:,:), intent(in) :: phil
@@ -159,9 +160,10 @@ subroutine GFS_surface_generic_pre_run (nthreads, im, levs, vfrac, islmsk, isot,
         ! Save current values of vegetation, soil and slope type
         vtype_save(:) = vtype(:)
         stype_save(:) = stype(:)
+        scolor_save(:) = scolor(:)
         slope_save(:) = slope(:)
 
-        call update_vegetation_soil_slope_type(nthreads, im, isot, ivegsrc, islmsk, vtype, stype, slope)
+        call update_vegetation_soil_slope_type(nthreads, im, isot, ivegsrc, islmsk, vtype, stype,scolor, slope)
 
         do i=1,im
           sigmaf(i) = max(vfrac(i), 0.01_kind_phys)
@@ -191,16 +193,19 @@ subroutine GFS_surface_generic_pre_run (nthreads, im, levs, vfrac, islmsk, isot,
 
       end subroutine GFS_surface_generic_pre_run
 
-      subroutine update_vegetation_soil_slope_type(nthreads, im, isot, ivegsrc, islmsk, vtype, stype, slope)
+      subroutine update_vegetation_soil_slope_type(nthreads, im, isot, ivegsrc, islmsk, vtype, stype,scolor, slope)
 
         implicit none
 
         integer, intent(in)    :: nthreads, im, isot, ivegsrc, islmsk(:)
-        integer, intent(inout) :: vtype(:), stype(:), slope(:)
+        integer, intent(inout) :: vtype(:), stype(:),scolor(:), slope(:)
         integer :: i
 
 !$OMP  parallel do num_threads(nthreads) default(none) private(i) &
-!$OMP      shared(im, isot, ivegsrc, islmsk, vtype, stype, slope)
+!$OMP      shared(im, isot, ivegsrc, islmsk, vtype, stype,scolor, slope)
+
+! scolor is a place holder now, how to update soil color based on the mask/veg/sot src
+
         do i=1,im
           if (islmsk(i) == 2) then
             if (isot == 1) then

physics/GFS_surface_generic_pre.meta

@@ -50,6 +50,13 @@
   dimensions = (horizontal_dimension)
   type = integer
   intent = inout
+[scolor]
+  standard_name = soil_color_classification
+  long_name = soil color for lsm
+  units = index
+  dimensions = (horizontal_dimension)
+  type = integer
+  intent = inout
 [vtype]
   standard_name = vegetation_type_classification
   long_name = vegetation type for lsm
@@ -71,6 +78,13 @@
   dimensions = (horizontal_dimension)
   type = integer
   intent = out
+[scolor_save]
+  standard_name = soil_color_classification_save
+  long_name = soil color for lsm save
+  units = index
+  dimensions = (horizontal_dimension)
+  type = integer
+  intent = out
 [vtype_save]
   standard_name = vegetation_type_classification_save
   long_name = vegetation type for lsm save
@@ -162,6 +176,13 @@
   dimensions = (horizontal_loop_extent)
   type = integer
   intent = inout
+[scolor]
+  standard_name = soil_color_classification
+  long_name = soil color for lsm
+  units = index
+  dimensions = (horizontal_loop_extent)
+  type = integer
+  intent = inout
 [vtype]
   standard_name = vegetation_type_classification
   long_name = vegetation type for lsm
@@ -190,6 +211,13 @@
   dimensions = (horizontal_loop_extent)
   type = integer
   intent = out
+[scolor_save]
+  standard_name = soil_color_classification_save
+  long_name = soil color for lsm save
+  units = index
+  dimensions = (horizontal_loop_extent)
+  type = integer
+  intent = out
 [slope_save]
   standard_name = surface_slope_classification_save
   long_name = sfc slope type for lsm save
@@ -470,4 +498,4 @@
   units = 1
   dimensions = ()
   type = integer
-  intent = out
+  intent = out