cyvcf2

tskit-dev · Nov 7, 2022 · 236ac2b · 236ac2b
1 parent bcdb5ea
commit 236ac2b
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Showing 3 changed files with 6 additions and 2 deletions.
diff --git a/requirements/CI-tests-conda/requirements.txt b/requirements/CI-tests-conda/requirements.txt
@@ -3,3 +3,4 @@ lmdb==0.9.29
 msprime==1.1.1
 numcodecs==0.9.1
 python-lmdb==1.3.0
+
diff --git a/requirements/CI-tests-pip/requirements.txt b/requirements/CI-tests-pip/requirements.txt
@@ -9,11 +9,10 @@ seaborn==0.11.2
 sortedcontainers==2.4.0
 tqdm==4.64.0
 tskit==0.5.3
-
 # Held at 1.21.6 for sgkit compat
 numpy==1.21.6
 # Held at 1.3.5 for sgkit compat
 pandas==1.3.5
 # Held at 2.10.3 for sgkit compat
 zarr==2.10.3
-sgkit[vcf]==0.5.0
+sgkit[vcf]==0.5.0;platform_system!="Windows"
diff --git a/tests/test_sgkit.py b/tests/test_sgkit.py
@@ -19,13 +19,17 @@
 """
 Tests for the data files.
 """
+import sys
+
 import msprime
 import numpy as np
+import pytest
 import sgkit.io.vcf
 
 import tsinfer
 
 
+@pytest.mark.skipif(sys.platform == "win32", reason="No cyvcf2 on windows")
 def test_sgkit_dataset(tmp_path):
     ts = msprime.sim_ancestry(
         samples=50,