Wiki of CyVerseUK project. Tutorials and overview of technologies.

Renseq Pacbio pipeline

A static webpage repository where the Warwick CyVerse UK team publish announcements such as workshops and tutorials.

base templates for Dockerfile and wrappers

Dockerized Agave app for Polymarker, a SNP assay development pipeline

Docker container for retrieveing Phenotypic data from the Brassica Information Portal. It uses the BIP-API, stores output in .csv-format and passes the Sequence IDs on into a .txt file for further queries.

Beast 2 agave & docker package

blast docker image and cyverse integration

polymarker image with wheat genome

MrBayes app w/docker & mpi

portcullis tool by Dan Mapleson - https://github.com/maplesond/portcullis

RAxML agave app and docker image

Docker image and JSON files for CyverseUK for Mikado, a lightweight Python3 pipeline to identify the most useful or “best” set of transcripts from multiple transcript assemblies