cyverse

Docker container for retrieveing Phenotypic data from the Brassica Information Portal. It uses the BIP-API, stores output in .csv-format and passes the Sequence IDs on into a .txt file for further queries.

docker cyverseuk bip cyverse agave bip-api retrieve-brassica-phenotypes brassica-information-portal

Updated Apr 12, 2017
Ruby

cyverseuk / ontologizer

Star

dockerfile bioinformatics hpc ontology gene-ontology cyverseuk agaveapi hpc-applications cyverse

Updated May 16, 2017
Shell

Computational-Plant-Science / plantit-example-accessing-data

Star

A simple workflow mapping an input file to an output file.

data example cyverse cyverse-discovery-environment plantit

Updated Feb 22, 2022

mwvaughn / cyverse-sdk

Star

A resource for CyVerse developers

api data cloud command-line hpc examples tutorials xsede agaveapi cyverse

Updated Nov 15, 2017
Shell

cyverse-gis / calliope

Star

Github.io website for Calliope Project

metadata elasticsearch drones cyverse suas

Updated Nov 9, 2020
HTML

cyverseuk / btrim

Star

dockerfile bioinformatics hpc trimming cyverseuk agaveapi hpc-applications cyverse

Updated May 16, 2017
Shell

cyverseuk / cut_columns

Star

bioinformatics hpc tabular-data columns cyverseuk agaveapi hpc-applications cyverse

Updated Sep 21, 2017
Shell

cyverseuk / samtools

Star

dockerfile sorting bam-files bioinformatics hpc cyverseuk agaveapi samtools hpc-applications cyverse

Updated May 24, 2017
Shell

cyverseuk / ocsi

Star

dockerfile application bioinformatics cyverseuk agaveapi cyverse

Updated Apr 10, 2018
Python

cyverseuk / Cufflinks

Star

dockerfile bioinformatics rna-seq hpc cyverseuk agaveapi hpc-applications cufflinks cyverse

Updated Mar 7, 2019
Shell

cyverseuk / Bowtie2

Star

dockerfile bioinformatics hpc cyverseuk hpc-applications sequence-alignment cyverse bowtie2

Updated May 15, 2017
Shell

cyverseuk / uncompress_gunzip

Star

compression hpc gunzip cyverseuk agaveapi hpc-applications cyverse

Updated Apr 21, 2017

cyverseuk / concatenate_files

Star

bioinformatics hpc cyverseuk agaveapi concatenation hpc-applications cyverse concatenate-files

Updated Apr 21, 2017
Shell

willkuhn / towd

Star

Exploring the evolutionary history of dragonflies and damselflies (Odonata) from their wings!

morphology morphometrics digitization wings cyverse national-science-foundation digitization-workflows odonata species-identification bisque

Updated Apr 15, 2021

warelab / sciapps

Star

SciApps: a cloud-based platform for reproducible bioinformatics workflows

workflow cyverse agave

Updated Oct 6, 2020
JavaScript

cyverseuk / MUSCLE

Star

dockerfile bioinformatics hpc muscle cyverseuk agaveapi hpc-applications sequence-alignment cyverse

Updated May 16, 2017
Shell

Improve this page

Add a description, image, and links to the cyverse topic page so that developers can more easily learn about it.

Curate this topic

Add this topic to your repo

To associate your repository with the cyverse topic, visit your repo's landing page and select "manage topics."

Learn more

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

cyverse

Here are 24 public repositories matching this topic...

cyverseuk / Trimmomatic

cyverseuk / sickle

cyverseuk / blast

cyverseuk / Tophat2

cyverseuk / Retrieve_BIP_Phenotypes

cyverseuk / ontologizer

Computational-Plant-Science / plantit-example-accessing-data

mwvaughn / cyverse-sdk

cyverse-gis / calliope

cyverseuk / btrim

cyverseuk / cut_columns

cyverseuk / samtools

cyverseuk / ocsi

cyverseuk / Cufflinks

cyverseuk / Bowtie2

cyverseuk / uncompress_gunzip

cyverseuk / concatenate_files

willkuhn / towd

warelab / sciapps

cyverseuk / MUSCLE

Improve this page

Add this topic to your repo