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STATO OWL to FHIR CodeSystem.concept mappings
Dazhi Jiao edited this page Sep 30, 2019
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2 revisions
Proposal for concept inclusion:
It appears that ontologies such as STATO deliberately intend to defeat the OWL imports mechanism and, as such, we should represent that content exactly as it is represented, including all entries that are in the system, but using the IAO_0000412
predicate to set concept.property["imported"]
. Ontologies that respect owl:imports
should only show the non-imported content (?)
(Examples come from STATO_0000525
)
predicate | FHIR Target | Example | Definition | Note |
---|---|---|---|---|
rdfs:label | concept.display | "covarience matrix" | there are places where there are MANY rdfs:labels - not sure what to do in this case | |
IAO_0000114 | obo:IAO_0000122 | has curation status | ||
IAO_0000115 | concept.definition | |||
IAO_0000117 | NONE | "Philippe Rocca-Serra"@en | term editor | |
IAO_0000118 | concept.display | "dispersion matrix"@en, "variance-covariance matrix"@en | alternative term | Note that this is recorded as STATO_0000032, a child of IAO_0000118 |
STATO_0000041 | property.code["R_Command"] | "ad.test(x) function, where x is a numeric vector" | R command | |
rdfs:subClassOf | property.code["parent"] | valueCoding(system=NOTE1, code=NOTE2, display=rdfs:label(object)) | IAO_0000412 |