Skip to content

STATO OWL to FHIR CodeSystem.concept mappings

Dazhi Jiao edited this page Sep 30, 2019 · 2 revisions

Proposal for concept inclusion:

It appears that ontologies such as STATO deliberately intend to defeat the OWL imports mechanism and, as such, we should represent that content exactly as it is represented, including all entries that are in the system, but using the IAO_0000412 predicate to set concept.property["imported"]. Ontologies that respect owl:imports should only show the non-imported content (?)

(Examples come from STATO_0000525)

predicate FHIR Target Example Definition Note
rdfs:label concept.display "covarience matrix" there are places where there are MANY rdfs:labels - not sure what to do in this case
IAO_0000114 obo:IAO_0000122 has curation status
IAO_0000115 concept.definition
IAO_0000117 NONE "Philippe Rocca-Serra"@en term editor
IAO_0000118 concept.display "dispersion matrix"@en, "variance-covariance matrix"@en alternative term Note that this is recorded as STATO_0000032, a child of IAO_0000118
STATO_0000041 property.code["R_Command"] "ad.test(x) function, where x is a numeric vector" R command
rdfs:subClassOf property.code["parent"] valueCoding(system=NOTE1, code=NOTE2, display=rdfs:label(object)) IAO_0000412
Clone this wiki locally