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Adding tools for converting to OWL Refset and back to OWL Ontology
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alopezo
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alopezo
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Apr 18, 2017
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,59 @@ | ||
| /* | ||
| * | ||
| * * Copyright (C) 2014 termMed IT | ||
| * * www.termmed.com | ||
| * * | ||
| * * Licensed under the Apache License, Version 2.0 (the "License"); | ||
| * * you may not use this file except in compliance with the License. | ||
| * * You may obtain a copy of the License at | ||
| * * | ||
| * * http://www.apache.org/licenses/LICENSE-2.0 | ||
| * * | ||
| * * Unless required by applicable law or agreed to in writing, software | ||
| * * distributed under the License is distributed on an "AS IS" BASIS, | ||
| * * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
| * * See the License for the specific language governing permissions and | ||
| * * limitations under the License. | ||
| * | ||
| */ | ||
|
|
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| package com.termmed.owl; | ||
|
|
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| import java.io.*; | ||
|
|
||
| /** | ||
| * Created by alo on 4/18/17. | ||
| */ | ||
| public class RefsetToOWLRenderer { | ||
|
|
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| public RefsetToOWLRenderer() { | ||
| } | ||
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| public void render(File owlRefsetFile, Writer writer) throws IOException { | ||
| BufferedReader br = new BufferedReader(new InputStreamReader(new FileInputStream(owlRefsetFile), "UTF8")); | ||
| br.readLine(); | ||
| String line; | ||
| String[] spl; | ||
| System.out.println("Converting refset from " + owlRefsetFile.getName()); | ||
| int count = 0; | ||
| boolean headerWritten = false; | ||
| while ((line=br.readLine())!=null) { | ||
| count++; | ||
| if (count ==1 || count % 10000 == 0) { | ||
| System.out.print("."); | ||
| } | ||
| spl = line.split("\t", -1); | ||
| if (spl.length == 7) { | ||
| String axiom = spl[6]; | ||
| if (!headerWritten && !axiom.startsWith("Prefix")) { | ||
| writer.write("\n"); | ||
| writer.write("Ontology(<http://www.termmed.com/ontologies/snomedct>\n"); | ||
| writer.write("\n"); | ||
| headerWritten = true; | ||
| } | ||
| writer.write(axiom + "\n"); | ||
| } | ||
| } | ||
| writer.write(")"); | ||
| } | ||
| } |
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