fix console gapfill func for GC

systemsomicslab · Nov 13, 2024 · 3cabd9d · 3cabd9d
1 parent 4f4f2c1
commit 3cabd9d
Show file tree

Hide file tree

Showing 2 changed files with 2 additions and 1 deletion.
diff --git a/tests/MSDIAL5/MsdialCoreTestApp/Process/GcmsProcess.cs b/tests/MSDIAL5/MsdialCoreTestApp/Process/GcmsProcess.cs
@@ -222,6 +222,7 @@ private async Task<int> ExecuteAsync(MsdialGcmsDataStorage storage, string outpu
             var alignmentFile = storage.AlignmentFiles.First();
             var factory = new GcmsAlignmentProcessFactory(files, storage);
             var aligner = factory.CreatePeakAligner();
+            aligner.ProviderFactory = providerFactory;
             var result = aligner.Alignment(files, alignmentFile, serializer);
             result.Save(alignmentFile);
             var decResults = LoadRepresentativeDeconvolutions(storage, result.AlignmentSpotProperties);

diff --git a/tests/MSDIAL5/MsdialCoreTestApp/Properties/launchSettings.json b/tests/MSDIAL5/MsdialCoreTestApp/Properties/launchSettings.json
@@ -2,7 +2,7 @@
   "profiles": {
     "MsdialCoreTestApp": {
       "commandName": "Project",
-      "commandLineArgs": "gcms -i D:\\MSDIALdemo\\gcms_nominal_metabolomics\\rawdata2 -o D:\\MSDIALdemo\\gcms_nominal_metabolomics\\output -m D:\\MSDIALdemo\\wine\\pramGC.txt -p\r\n"
+      "commandLineArgs": "gcms -i D:\\MSDIALdemo\\gcms_nominal_metabolomics\\rawdata4 -o D:\\MSDIALdemo\\wine\\output2 -m D:\\MSDIALdemo\\wine\\pramGC.txt -p\r\n"
     }
   }
 }