Code

BlueButton 2 RIF Exporter#770

Code

Merged

hadleynet merged 131 commits intomastersynthetichealth/synthea:masterfrom bb-exportsynthetichealth/synthea:bb-exportCopy head branch name to clipboardDec 21, 2021

+54,052-339

Commits

Commits on Dec 9, 2021

• Initial skeleton BB2 exporter

  hadleynet

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• Add beneficiary details. Add inpatient and outpatient files. Fix checkstyle warnings.

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• Initial BB2 Inpatient claims. Required fields only.

  

  jawalonoski

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• Fix broken unit tests.

  

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• Fix claim costs.

  

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• Export BB2 race code

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• Fix FHIR export with cost changes.

  

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• Add missing properties.

  

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• Add reference year and age at end of reference year fields to the beneficiary table

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• Initial outpatient file for bb2.

  

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• Add carrier claims to BB2.

  

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• Add PDE export to BB2.

  

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• Barebones beneficiary history file (required fields only)

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• added provider state codes and logic to generate compliant hic ids

  

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• removed print statement

  

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• Disable BB2 export of everything except beneficiary and inpatient tables. Change beneficiary ID to be a negative integer.

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• added ssa county code lookups for beneficiary data

  

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• Ensure BB2 cost fields are two decimal places.

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• converted default ssa value to dummy zipcode since field is required.

  

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• changed default value for ssa lookup to Bedford ssa code

  

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• Remove bad comment and unused import.

  

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• Fix state and sex codes. Fix checkstyle warnings.

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• Add diagnosis map.

  

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• Fix exceptions when running without map.

  

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• Add procedures codes to BB inpatient.

  

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• BB optional num columns must be zero if empty.

  

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• Rename BB2 RIF export property

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• Add DME: crutches, nebulizer, blood glucose meter and test strips.

  

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• Add code translation for medications, refactor condition code translation to extract a common utility class for code translations.

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• Fix catch blck for Java 8

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• Fix comment

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• Enable prescription exports, fix deprecated warnings.

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• Re-enable prescription file flush at end

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• Add CLM_DRG_CD code to inpatient output

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• Hk 4 bb export (#860)

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• new property to synthea.properties: exporter.bfd.default_config_file;

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• undo rebase errors (add back CodeMapper code)

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• remove test that fails in Java 8 but works in Java 11;

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• Remove some stuff that got merged back in by mistake. Remove new source of randomness to ensure reproducibility, additional minor updates.

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• delete obsolete comments

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• Add extra test with fixed patient creation. Change exception handling in main setFromConfig loop so it just skips cells that cause an error instead of abandoning the remaining cells.

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• Add support for device and supply costs

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• Fix JDK8 test failure

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• Pull TSV config classes into main BFD exporter class. Move TSV macros back to Java code. Add code mapping for DME.

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• Fix issues that prevent loading into BFD

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• Update BFD inpatient table export

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• Fix CI test

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• Really fix CI test this time

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• Fix space/tab in tsv file.

  

  jawalonoski

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• Fix my fix.

  

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• BFD exporter now outputs NPI file.

  

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• Export NPIs for providers and clinicians

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• Updates to BFD outpatient file - now loads and passes BFD unit tests

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• Initial hospice.

  

  jawalonoski

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• Add basic home health module.

  

  jawalonoski

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• Added enums for RIF HHA, SNF and Hospice tables. Updated BFD spreadsheet to include additional tables and fixed a few glitches.

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• Added basic SNF module. Requires review.

  

  jawalonoski

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• Updates to get carrier file to import into BFD

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• Updates to get dme file to import into BFD

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• Changes to support bene history import to BFD

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• Only export DME that has a map.

  

  jawalonoski

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• Add SNF export.

  

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• Initial changes for HHA csv file.

  

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• Fix HHA export.

  

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• Add hospice file entries

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• Update spreadsheet to match additional coded fields

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• Update MBI_NUM field to match CMS MBI format

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• Output more realistic HICN values

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• Add configuration options for generated id ranges for bene id, claim id, claim group id and pde id. Make claim id, claim group id and pde id start at a negative number by default and decrease.

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• Add support for Part D contract IDs

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• updated hospice module

  

  Karen Bates

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• updated home health module

  

  Karen Bates

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• updated snf module

  

  Karen Bates

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• removed medication administration

  

  Karen Bates

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• removed old count visit, end visits code

  

  Karen Bates

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• added conditions and concepts that bring patients to hospice

  

  Karen Bates

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• added conditions and concepts that bring patients to home health

  

  Karen Bates

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• added conditions and concepts that bring patients into snf

  

  Karen Bates

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• added terminal state

  

  Karen Bates

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  1bfe3a8

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• Fix SetAttributes, Ranges, display values.

  

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• Adjust initiation of home, snf, hospice modules.

  

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• Add more diagnosis codes to RIF.

  

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• Add procedure codes to RIF SNF.

  

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• Add a manifest file to BB2 exports

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• Add check digit to generated NPIs

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• Rebase bb-export branch on master, switch file output to use the new Exporter.appendToFile facility.

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• Updates to hospice modules and updates to diagnosis codes for all BFD RIF file types.

  

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• Fix rare exception related to encounter.reason.

  

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• Changed data types for ClaimId and Beneificiary Id to Long from Int

  

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• Output multiple line items for hospice claims. Needs new hospice code mapping file available from the usual place.

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• Add HHA line items.

  

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• Update home line item algorithm. Skips unmappable items.

  

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• HHA: clear out unused fields.

  

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• Rename mapping file.

  

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• Update hospice export to iterate over claim entries instead of encounter procedures (to match home health exporter). Fix checkstyle warnings.

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• Export line items for additional BFD file types. Throw exception if code mapping files are missing.

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• Add configuration option to allow running BFD exporter without code mapping files

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• Update DME exporter to use claim line items, update BFD field spreadsheet to reflect recent changes.

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• Synchronize each claim output to ensure all line items are grouped together in the file

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• Add rendering physician NPI and diagnosis present on admission flag.

  

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• Attempt to fix thread issue and checkstyle warnings.

  

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• Move BFD code mapping files. Change refs to newly static fields. Default BFD export to false.

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• Remove unused attribute.

  

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• Address some PR review comments: removing duplicate functionality, move BOM handling to Utilities.

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• AB2D missing fields.

  

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• Factor out PartD contract history and change algorithm so bene's only change contracts 20-30% of the time

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• Address PR review comments. Adjust part d contract history so only 20% of benes change their current plan each Jan.

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• Only generate a single beneficiary file but group rows for each beneficiary together.

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• Improved Medicare Part D output for RIF exporter.

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• Additional missing AB2D field.

  

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• Export a properties file that captures the end state of all of the RIF IDs (BENE_ID, MBI etc) that increment per patient or claim. This allows a subsequent run of Synthea to pick up where the previ…

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• Only write RIF file headers if the file is empty, otherwise append to existing file.

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• Add new option to SetAttribute for valueAttribute.

  

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• Add RIF export for FI_DOC_CLM_CNTL_NUM and CARR_CLM_CNTL_NUM fields

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• Separate BFD bene export into two files: one for INSERTS, the other for UPDATES. This avoids an issue in the RifLoader related to batching where an UPDATE could precede an INSERT.

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• Bene file is now exported to three files: one for all inserts, one for the final (chronologically) updates (1 per bene) and one for all interim updates between the initial insert and the final upda…

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• DME updates for supplies.

  

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• Move wellness claims from outpatient file to carrier file. Adjust encounter skip criteria for outpatient and inpatient files to include encounters with coded reasons even if no diagnoses or procedu…

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• Only test certain bb export assertions when corresponding code maps are present

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• Assorted additional BFD fields and tweaks for consistency across files.

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• Fix BFD TSV error

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• Assorted updates to align BFD field coverage spreadsheet with code and to ensure fields are supported across all appropriate file types.

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• Another batch of small changes to reconcile field coverage across files and between spreadsheet and code

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• Update cost adjustments with 2019 CMS Geographic Variation Public Use File.

  

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• Re-add end_stage_renal_disease attribute for Medicare eligibility determination.

  

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• Remove empty assign_to_attribute fields.

  

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• Add betos codes to carrier and dme, add ESRD codes to bene and bene_history

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Commits on Dec 10, 2021

• Post rebase updates to restore function and address new checkstyle warnings

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Commits on Dec 16, 2021

• Address PR review comments. Rework low income indicator field.

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• Undo a change that introduces slightly different behavior when the value of an attribue is null

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• Trying to track down a couple of CI-only test failures

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