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v0.7.0

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@salvadord salvadord released this 10 Jun 02:38
· 3214 commits to master since this release

Version 0.7.0

IMPORTANT NOTE: NO BACKWARD REPRODUCIBILITY -- due to improvements in the random number generators it won't be possible to reproduce results of previous versions that required random values, e.g. random spike streams, connections or cell locations.

  • Replaced python random package methods with more robust h.Random() methods (no backward reproducibility)

  • Added netParams error checking (BETA version: set cfg.checkErrors = True to test)

  • Enabled use of VecStim spkTimes pops with individual list of cells

  • Replaced 'pop' with 'popLabel' (added fix for backward compatibility) (issue #213)

  • Can now add arbitrary set of spike times to VecStim pop

  • Dict with popColors can be passed to plotRaster() and plot2Dnet()

  • Added analysis.plotEPSPAmp()

  • readCmdLineArgs() now accepts default paths for cfg and netParams

  • Added option to customize command in batch hpc runs (e.g. 'mpirun' vs 'ibrun')

  • Added dpi param to plotRaster()

  • Added recording of h.t to simData

  • Replaced ions 'init_ext_conc' and 'init_int_conc' with 'o' and 'i' (issue #151)

  • Replaced 'globs' with 'globals'

  • Fixed bug in import of ion concentrations

  • Fixed bug in title of plotTraces()

  • Fixed bug when setting wrong num of weights or locs for synsPerConn>1

  • Fixed bug: subConn rules now update weight if different weightNorm

  • Fixed bug: missing call to noiseFromRandom() for NetStims

  • Fixed bug setting pop density with absoulute location ranges

  • Fixed missing NeuroML message so only appears in master node

  • Fixed bug in plotConn

  • Fixed bug - stimTargetParams now accepts a list of secs for 'sec' param