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Batch fANOVA importance analysis #827

Merged
merged 54 commits into from
Aug 1, 2024
Merged

Batch fANOVA importance analysis #827

merged 54 commits into from
Aug 1, 2024

Commits on Mar 17, 2024

  1. batch tools subpackage

    @jchen6727
    jchen6727 committed Mar 17, 2024
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Commits on Mar 18, 2024

  1. comm update

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    jchen6727 committed Mar 18, 2024
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Commits on Mar 19, 2024

  1. new search methods

    @jchen6727
    jchen6727 committed Mar 19, 2024
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  2. fixed import issues

    @jchen6727
    jchen6727 committed Mar 19, 2024
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Commits on Mar 20, 2024

  1. updates comm, search

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    jchen6727 committed Mar 20, 2024
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Commits on Mar 21, 2024

  1. search.py

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    jchen6727 committed Mar 21, 2024
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Commits on Mar 27, 2024

  1. wrapper tools search

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    jchen6727 committed Mar 27, 2024
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Commits on Mar 30, 2024

  1. update to batchtools

    @jchen6727
    jchen6727 committed Mar 30, 2024
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Commits on Apr 4, 2024

  1. codebase moved to netpyne batchtools 

    https://github.com/jchen6727/netpyne/tree/batch
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    jchen6727 committed Apr 4, 2024
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Commits on Apr 8, 2024

  1. update to comm.py, runners.py

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    jchen6727 committed Apr 8, 2024
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Commits on Apr 16, 2024

  1. update to search (kwargs)

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    jchen6727 committed Apr 16, 2024
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Commits on Apr 18, 2024

  1. config update (should delete two keys @ end?)

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    jchen6727 committed Apr 18, 2024
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Commits on Apr 25, 2024

  1. replace pubtk with batchtk for compatibility with pip

    @jchen6727
    jchen6727 committed Apr 25, 2024
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  2. update the submit (zsh->sh)

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    jchen6727 committed Apr 25, 2024
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Commits on Apr 28, 2024

  1. update batchtools, submits

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    jchen6727 committed Apr 28, 2024
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Commits on Apr 30, 2024

  1. fixed socket functionality for submits.py

    @jchen6727
    jchen6727 committed Apr 30, 2024
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Commits on May 7, 2024

  1. batchtools documentation

    @jchen6727
    jchen6727 committed May 7, 2024
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Commits on May 8, 2024

  1. minor updates- search

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    jchen6727 committed May 8, 2024
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Commits on May 9, 2024

  1. fixed bug in conn, updated test/examples/* to use dynamic pathing

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    jchen6727 committed May 9, 2024
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Commits on May 11, 2024

  1. update CHANGES.md

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    jchen6727 committed May 11, 2024
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Commits on May 14, 2024

  1. Updated documentation batchtools.rst

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    jchen6727 committed May 14, 2024
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  2. Merge branch 'development' into batch

    @jchen6727
    jchen6727 committed May 14, 2024
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  3. update user_documentation.rst

    @jchen6727
    jchen6727 committed May 14, 2024
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  4. sort init.py

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    jchen6727 committed May 14, 2024
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  5. updated documentation with new batchtools (beta)

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    jchen6727 committed May 14, 2024
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  6. updating documentation (user_documentation.rst) re: new batchtools … 

    …(beta version) (suny-downstate-medical-center#819)

* fixed bug in conn, updated test/examples/* to use dynamic pathing

* update CHANGES.md

* updated documentation with new batchtools (beta)
    @jchen6727
    jchen6727 authored May 14, 2024
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  7. updating user documentation

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    jchen6727 committed May 14, 2024
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  8. update per deployment on HPC

    @jchen6727
    jchen6727 committed May 14, 2024
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Commits on May 16, 2024

  1. Updated logic, bug fix 

    cfg.progressBar = 2 will display all progress bars
cfg.progressBar = 1 will call tqdm with progress bars w/ leave = 0
cfg.progressBar = 0 will disable the progress bar.
    @jchen6727
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  2. Merge branch 'development' into development

    @jchen6727
    jchen6727 authored May 16, 2024
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  3. quick fix, adding cfg.progressBar logic, fixed another issue with the… 

    … loading bar. (suny-downstate-medical-center#821)

* Updated logic, bug fix

cfg.progressBar = 2 will display all progress bars
cfg.progressBar = 1 will call tqdm with progress bars w/ leave = 0
cfg.progressBar = 0 will disable the progress bar.
    @jchen6727
    jchen6727 authored May 16, 2024
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  4. Merge branch 'batch' into batch

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    jchen6727 authored May 16, 2024
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  5. Merge remote-tracking branch 'downstate/batch' into batch

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    jchen6727 committed May 16, 2024
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Commits on May 31, 2024

  1. I love git

    @Jsprouse0
    Jsprouse0 committed May 31, 2024
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Commits on Jun 3, 2024

  1. updated makedirs

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    jchen6727 committed Jun 3, 2024
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  2. Merge branch 'development' of https://github.com/jchen6727/netpyne in… 

    …to development
    @jchen6727
    jchen6727 committed Jun 3, 2024
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  3. updated mkdir to makedirs (bug fix) -- note the exist_ok change for l… 

    …ater PR
    @Jsprouse0
    Jsprouse0 authored Jun 3, 2024
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Commits on Jul 2, 2024

  1. fixed typo 

    'sge' or 'sh' are valid options for the 'job_type' argument, not 'shell'
    @jchen6727
    jchen6727 committed Jul 2, 2024
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Commits on Jul 5, 2024

  1. fixed generating rhythmic spiking pattern with 'uniform' option

    @vvbragin
    vvbragin committed Jul 5, 2024
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  2. updated link to installation instructions

    @vvbragin
    vvbragin committed Jul 5, 2024
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Commits on Jul 7, 2024

  1. moved set_map from batchtk, additional support for n-dim lists

    @jchen6727
    jchen6727 committed Jul 7, 2024
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Commits on Jul 11, 2024

  1. fixed misleading console output when cfg.recordStims is On

    @vvbragin
    vvbragin committed Jul 11, 2024
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Commits on Jul 15, 2024

  1. various examples (using rosenbrock)

    @jchen6727
    jchen6727 committed Jul 15, 2024
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Commits on Jul 16, 2024

  1. updated .rst documentation

    @jchen6727
    jchen6727 committed Jul 16, 2024
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  2. Merge remote-tracking branch 'origin/development' into development

    @jchen6727
    jchen6727 committed Jul 16, 2024
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  3. updates to batchtools to allow 'cfg' initialization with supplied dic… 

    …tionary, fanova example started. batchtools.rst updated
    @jchen6727
    jchen6727 committed Jul 16, 2024
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  4. Merge remote-tracking branch 'jchen6727/development' into batch

    @jchen6727
    jchen6727 committed Jul 16, 2024
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Commits on Jul 17, 2024

  1. fixed save.py

    @jchen6727
    jchen6727 committed Jul 17, 2024
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  2. updated documentation to batch

    @jchen6727
    jchen6727 committed Jul 17, 2024
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Commits on Jul 23, 2024

  1. updates to batchtools 

    fanova (large sample -- 625), running fanova analysis
cfg.py of CA3 including additional cfg settings to avoid confusion
    @jchen6727
    jchen6727 committed Jul 23, 2024
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Commits on Jul 30, 2024

  1. fANOVA importance evaluator (implement in batchtk?)

    @jchen6727
    jchen6727 committed Jul 30, 2024
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Commits on Aug 1, 2024

  1. fanova example

    @jchen6727
    jchen6727 committed Aug 1, 2024
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  2. updated user documentation

    @jchen6727
    jchen6727 committed Aug 1, 2024
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  3. Merge branch 'batch' into batch

    @jchen6727
    jchen6727 authored Aug 1, 2024
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