PR from development to master - VERSION 1.0.6 #806
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save model in new format
…te-medical-center/netpyne into development" This reverts commit c38f482, reversing changes made to f5d3376.
…r/netpyne into development
… Re-factored cell class detection in pop.py
…_params_correction Fixed loading point cell params from legacy models (incl. ssue 607)
…itions Check conditions
update grid and util for sge
update grid and util for sge
…nce (#781) * cell inputs.py `tstop` versus `stop` * updated .rst for documentation, inputs * updated 'tstop', 'stop', integer for n_inputs
**New features** - Raster plot colored by phase - Examples based on the CA3 model using the 'colorbyPhase' option in the plotRaster **Bug fixes** - Fix voltage movie tutorial - Fix to automatically include netstims in the sim.allSimData object when plotRaster 'include' selects 'all'
…tpyne-105 Feature/netpyne 105
…tpyne-106 Feature/netpyne 106
…ions pre-processing)
…_loading_fix fixed loading netParams in some scenarios
This is required to prevent matplotlib from being imported on HPCs.
subconn with KeyError raise that is slightly more descriptive batch and netParams supporting '.' traversal updated the secList to not break when a section (generally axon) without pt3d exists
in setCfgMapping, if getattr(cfg, k) returns any false equivalent value (0, False, None), will not be able to "set" true value
with getattr(cfg, k, None) unexpected behavior when value to map is equivalent to False (0, None, False, empty object)
…to development
…tpyne-172 Netpyne-172 Add metadata for complex stimulation in population
…ing (need to do it more generically)
…nt' into development
…to development executor
Feat/test on more pythons
File copying in batch.py compability issue fixed
…loading_api API for loading .mod files selectively
minor bugfixes
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