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blacklist PhiX genome, since it is often used as spike-in control
stricter filtering of read-through fusions
fix broken compilation due to outdated zlib URL (thanks to @iainrb)
updated protein domain annotation files (GFF3), now with 7-15% more annotation records
updated reference files in download_references.sh to match protein domain annotation version
download_references.sh did not properly harmonize chromosome names between assembly (FastA) and annotation (GTF) when an assembly with chr prefix was used (hg19/38, mm10/39), which had minor implications on alignment and fusion calling
coverage plots can be scaled separately and/or to a user-defined cutoff (--coverageRange=...)
scripts are now compatible with macOS (a recent version of bash must be installed, though; the preinstalled version 3.2 is too old)
minor fixes for reading frame prediction when breakpoint is close to first/last exon