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Arriba v2.3.0

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@suhrig suhrig released this 29 May 10:42
· 23 commits to master since this release
  • blacklist PhiX genome, since it is often used as spike-in control
  • stricter filtering of read-through fusions
  • fix broken compilation due to outdated zlib URL (thanks to @iainrb)
  • updated protein domain annotation files (GFF3), now with 7-15% more annotation records
  • updated reference files in download_references.sh to match protein domain annotation version
  • download_references.sh did not properly harmonize chromosome names between assembly (FastA) and annotation (GTF) when an assembly with chr prefix was used (hg19/38, mm10/39), which had minor implications on alignment and fusion calling
  • coverage plots can be scaled separately and/or to a user-defined cutoff (--coverageRange=...)
  • scripts are now compatible with macOS (a recent version of bash must be installed, though; the preinstalled version 3.2 is too old)
  • minor fixes for reading frame prediction when breakpoint is close to first/last exon