Shannon

RNA-Seq

This GitHub repostitory contains the code and the website for the Shannon assembly project is here: http://sreeramkannan.github.io/Shannon/

Name		Name	Last commit message	Last commit date
Latest commit History 250 Commits
BACKUP		BACKUP
Samples		Samples
__pycache__		__pycache__
testSuite		testSuite
.DS_Store		.DS_Store
README.md		README.md
algorithm_SF.py		algorithm_SF.py
ext_corr.py		ext_corr.py
extension_correction.py		extension_correction.py
extension_correction_Kminus1.py		extension_correction_Kminus1.py
fast_reps.py		fast_reps.py
faster_reps.py		faster_reps.py
filter_FP.py		filter_FP.py
filter_FP_2s.py		filter_FP_2s.py
filter_kallisto.py		filter_kallisto.py
filter_trans.py		filter_trans.py
find_reps_blat.py		find_reps_blat.py
kmers_for_component.py		kmers_for_component.py
kmers_for_component_back.py		kmers_for_component_back.py
kp1mer_to_kmer.py		kp1mer_to_kmer.py
manual.md		manual.md
mbgraph.py		mbgraph.py
multibridging.py		multibridging.py
parallel_blat.py		parallel_blat.py
parallel_blat_python.py		parallel_blat_python.py
path_decompose_sparse.py		path_decompose_sparse.py
process_concatenated_fasta.py		process_concatenated_fasta.py
rc_gnu.py		rc_gnu.py
rc_s.py		rc_s.py
run_MB_SF.py		run_MB_SF.py
run_MB_SF_fn.py		run_MB_SF_fn.py
run_parallel_cmds.py		run_parallel_cmds.py
run_quorum.py		run_quorum.py
shannon.py		shannon.py
temp		temp
test.py		test.py
test_suite.py		test_suite.py
tester.py		tester.py
trie.py		trie.py
weight_updated_graph.py		weight_updated_graph.py

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