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BUG: specific case instead of forloop
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@jungheejung
jungheejung committed Aug 21, 2024
1 parent 9255518 commit 7f21a6a
Showing 1 changed file with 59 additions and 59 deletions.
118 changes: 59 additions & 59 deletions spacetop_prep/datalad/resolve_missingevents/01_resolve_missingevents.py
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Original file line number Diff line number Diff line change
Expand Up @@ -137,67 +137,67 @@ def c3_handle_typo_cases(typo_fname, corrected_subject_id=None, dest_fname=None,
c1_process_temp_files(sub, ses, task, run, repo2task_dict)
subprocess.run(["git", "commit", "-m", f"DOC: copy over temporary data {sub} {ses} {run} {task}"])

elif row['case'] == 'C3':
# elif row['case'] == 'C3':
# c3_handle_typo_cases('/home/spacetop/repos/data/sub-0016/task-alignvideos/ses-04/sub-0156_ses-04_task-alignvideos_run-01_beh.csv',
# corrected_subject_id=16,
# dest_fname="/home/spacetop/repos/data/sub-0016/task-alignvideos/ses-04/sub-0016_ses-04_task-alignvideos_run-01_beh.csv",update_session_id=True)
typo_flist = ['/home/spacetop/repos/data/sub-0016/task-alignvideos/ses-04/sub-0156_ses-04_task-alignvideos_run-01_beh.csv',
'/home/spacetop/repos/data/sub-0016/task-alignvideos/ses-04/sub-0156_ses-04_task-alignvideos_run-01_TEMP_beh.csv',
'/home/spacetop/repos/data/sub-0016/task-alignvideos/ses-04/sub-0156_ses-04_task-alignvideos_run-02_beh.csv',
'/home/spacetop/repos/data/sub-0016/task-alignvideos/ses-04/sub-0156_ses-04_task-alignvideos_run-02_TEMP_beh.csv']
fix_flist = ['/home/spacetop/repos/data/sub-0016/task-alignvideos/ses-04/sub-0016_ses-04_task-alignvideos_run-01_beh.csv',
'/home/spacetop/repos/data/sub-0016/task-alignvideos/ses-04/sub-0016_ses-04_task-alignvideos_run-01_TEMP_beh.csv',
'/home/spacetop/repos/data/sub-0016/task-alignvideos/ses-04/sub-0016_ses-04_task-alignvideos_run-02_beh.csv',
'/home/spacetop/repos/data/sub-0016/task-alignvideos/ses-04/sub-0016_ses-04_task-alignvideos_run-02_TEMP_beh.csv']
for typo_fname, fix_fname in zip_longest(typo_flist, fix_flist):
c3_handle_typo_cases(typo_fname,
corrected_subject_id=16,
dest_fname=fix_fname,update_session_id=True)
directory = Path('/home/spacetop/repos/data/sub-0016/task-alignvideos/ses-04')
for old_filename in directory.glob('sub-0156_ses-04*.mat'):
new_filename = old_filename.with_name(old_filename.name.replace('sub-0156', 'sub-0016')) # Create the new filename by replacing part of the string
old_filename.rename(new_filename)
subprocess.run(["git", "commit", "-m", "BUG: resolve typo and update BIDS fields from sub-0156 to sub-0016"])

# sub-0098 -> sub-0021
typo_flist = ['/home/spacetop/repos/data/sub-0021/task-social/ses-01/sub-0098_ses-01_task-social_run-01-pain_beh.csv',
'/home/spacetop/repos/data/sub-0021/task-social/ses-01/sub-0098_ses-01_task-social_run-02-cognitive_beh.csv',
'/home/spacetop/repos/data/sub-0021/task-social/ses-01/sub-0098_ses-01_task-social_run-03-vicarious_beh.csv',
'/home/spacetop/repos/data/sub-0021/task-social/ses-01/sub-0098_ses-01_task-social_run-04-cognitive_beh.csv',
'/home/spacetop/repos/data/sub-0021/task-social/ses-01/sub-0098_ses-01_task-social_run-05-pain_beh.csv']
fix_flist = ['/home/spacetop/repos/data/sub-0021/task-social/ses-01/sub-0021_ses-01_task-social_run-01-pain_beh.csv',
'/home/spacetop/repos/data/sub-0021/task-social/ses-01/sub-0021_ses-01_task-social_run-02-cognitive_beh.csv',
'/home/spacetop/repos/data/sub-0021/task-social/ses-01/sub-0021_ses-01_task-social_run-03-vicarious_beh.csv',
'/home/spacetop/repos/data/sub-0021/task-social/ses-01/sub-0021_ses-01_task-social_run-04-cognitive_beh.csv',
'/home/spacetop/repos/data/sub-0021/task-social/ses-01/sub-0021_ses-01_task-social_run-05-pain_beh.csv']

for typo_fname, fix_fname in zip_longest(typo_flist, fix_flist):
c3_handle_typo_cases(typo_fname,
corrected_subject_id=21,
dest_fname=fix_fname,update_session_id=True)
directory = Path('/home/spacetop/repos/data/sub-0021/task-social/ses-01')
for old_filename in directory.glob('sub-0098*.mat'):
new_filename = old_filename.with_name(old_filename.name.replace('sub-0098', 'sub-0021')) # Create the new filename by replacing part of the string
old_filename.rename(new_filename)
subprocess.run(["git", "commit", "-m", "BUG: resolve typo and update BIDS fields from sub-0098 to sub-0021"])

# ses-19 -> ses-04
typo_flist = ['/home/spacetop/repos/data/sub-0019/task-fractional/sub-0019_ses-19_task-fractional_run-01-tomspunt_beh.csv',
'/home/spacetop/repos/data/sub-0019/task-fractional/sub-0019_ses-19_task-fractional_run-02-posner_beh.csv']
fix_flist = ['/home/spacetop/repos/data/sub-0019/task-fractional/sub-0019_ses-04_task-fractional_run-01-tomspunt_beh.csv',
'/home/spacetop/repos/data/sub-0019/task-fractional/sub-0019_ses-04_task-fractional_run-02-posner_beh.csv']

for typo_fname, fix_fname in zip_longest(typo_flist, fix_flist):
c3_handle_typo_cases(typo_fname,
corrected_subject_id=19,
dest_fname=fix_fname,update_session_id=True)
directory = Path('/home/spacetop/repos/data/sub-0019/task-fractional/ses-04')
for old_filename in directory.glob('sub-0019_ses-19*.mat'):
new_filename = old_filename.with_name(old_filename.name.replace('ses-19', 'ses-04')) # Create the new filename by replacing part of the string
old_filename.rename(new_filename)
subprocess.run(["git", "commit", "-m", "BUG: resolve typo and update BIDS fields from ses-19 to ses-04"])
typo_flist = ['/home/spacetop/repos/data/sub-0016/task-alignvideos/ses-04/sub-0156_ses-04_task-alignvideos_run-01_beh.csv',
'/home/spacetop/repos/data/sub-0016/task-alignvideos/ses-04/sub-0156_ses-04_task-alignvideos_run-01_TEMP_beh.csv',
'/home/spacetop/repos/data/sub-0016/task-alignvideos/ses-04/sub-0156_ses-04_task-alignvideos_run-02_beh.csv',
'/home/spacetop/repos/data/sub-0016/task-alignvideos/ses-04/sub-0156_ses-04_task-alignvideos_run-02_TEMP_beh.csv']
fix_flist = ['/home/spacetop/repos/data/sub-0016/task-alignvideos/ses-04/sub-0016_ses-04_task-alignvideos_run-01_beh.csv',
'/home/spacetop/repos/data/sub-0016/task-alignvideos/ses-04/sub-0016_ses-04_task-alignvideos_run-01_TEMP_beh.csv',
'/home/spacetop/repos/data/sub-0016/task-alignvideos/ses-04/sub-0016_ses-04_task-alignvideos_run-02_beh.csv',
'/home/spacetop/repos/data/sub-0016/task-alignvideos/ses-04/sub-0016_ses-04_task-alignvideos_run-02_TEMP_beh.csv']
for typo_fname, fix_fname in zip_longest(typo_flist, fix_flist):
c3_handle_typo_cases(typo_fname,
corrected_subject_id=16,
dest_fname=fix_fname,update_session_id=True)

directory = Path('/home/spacetop/repos/data/sub-0016/task-alignvideos/ses-04')
for old_filename in directory.glob('sub-0156_ses-04*.mat'):
new_filename = old_filename.with_name(old_filename.name.replace('sub-0156', 'sub-0016')) # Create the new filename by replacing part of the string
old_filename.rename(new_filename)
subprocess.run(["git", "commit", "-m", "BUG: resolve typo and update BIDS fields from sub-0156 to sub-0016"])

# sub-0098 -> sub-0021
typo_flist = ['/home/spacetop/repos/data/sub-0021/task-social/ses-01/sub-0098_ses-01_task-social_run-01-pain_beh.csv',
'/home/spacetop/repos/data/sub-0021/task-social/ses-01/sub-0098_ses-01_task-social_run-02-cognitive_beh.csv',
'/home/spacetop/repos/data/sub-0021/task-social/ses-01/sub-0098_ses-01_task-social_run-03-vicarious_beh.csv',
'/home/spacetop/repos/data/sub-0021/task-social/ses-01/sub-0098_ses-01_task-social_run-04-cognitive_beh.csv',
'/home/spacetop/repos/data/sub-0021/task-social/ses-01/sub-0098_ses-01_task-social_run-05-pain_beh.csv']
fix_flist = ['/home/spacetop/repos/data/sub-0021/task-social/ses-01/sub-0021_ses-01_task-social_run-01-pain_beh.csv',
'/home/spacetop/repos/data/sub-0021/task-social/ses-01/sub-0021_ses-01_task-social_run-02-cognitive_beh.csv',
'/home/spacetop/repos/data/sub-0021/task-social/ses-01/sub-0021_ses-01_task-social_run-03-vicarious_beh.csv',
'/home/spacetop/repos/data/sub-0021/task-social/ses-01/sub-0021_ses-01_task-social_run-04-cognitive_beh.csv',
'/home/spacetop/repos/data/sub-0021/task-social/ses-01/sub-0021_ses-01_task-social_run-05-pain_beh.csv']

for typo_fname, fix_fname in zip_longest(typo_flist, fix_flist):
c3_handle_typo_cases(typo_fname,
corrected_subject_id=21,
dest_fname=fix_fname,update_session_id=True)

directory = Path('/home/spacetop/repos/data/sub-0021/task-social/ses-01')
for old_filename in directory.glob('sub-0098*.mat'):
new_filename = old_filename.with_name(old_filename.name.replace('sub-0098', 'sub-0021')) # Create the new filename by replacing part of the string
old_filename.rename(new_filename)
subprocess.run(["git", "commit", "-m", "BUG: resolve typo and update BIDS fields from sub-0098 to sub-0021"])

# ses-19 -> ses-04
typo_flist = ['/home/spacetop/repos/data/sub-0019/task-fractional/sub-0019_ses-19_task-fractional_run-01-tomspunt_beh.csv',
'/home/spacetop/repos/data/sub-0019/task-fractional/sub-0019_ses-19_task-fractional_run-02-posner_beh.csv']
fix_flist = ['/home/spacetop/repos/data/sub-0019/task-fractional/sub-0019_ses-04_task-fractional_run-01-tomspunt_beh.csv',
'/home/spacetop/repos/data/sub-0019/task-fractional/sub-0019_ses-04_task-fractional_run-02-posner_beh.csv']

for typo_fname, fix_fname in zip_longest(typo_flist, fix_flist):
c3_handle_typo_cases(typo_fname,
corrected_subject_id=19,
dest_fname=fix_fname,update_session_id=True)

directory = Path('/home/spacetop/repos/data/sub-0019/task-fractional/ses-04')
for old_filename in directory.glob('sub-0019_ses-19*.mat'):
new_filename = old_filename.with_name(old_filename.name.replace('ses-19', 'ses-04')) # Create the new filename by replacing part of the string
old_filename.rename(new_filename)
subprocess.run(["git", "commit", "-m", "BUG: resolve typo and update BIDS fields from ses-19 to ses-04"])
sys.stdout = sys.__stdout__
print("complete")

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