NOTE: This release adds basic support for skipmers, but they are not
yet fully supported.
Minor new features:
- add genbank plant db to docs (#3429)
- add skipmer capacity to sourmash python layer via ffi (#3446)
- add skipmers; switch to reading frame approach for translation, skipmers (#3395)
- additional moltype specification needed for
sig downsample
with skipmers (#3457) - update with misc animal genomes (#3422)
Cleanup and documentation updates:
- add comment about semver and column headings (#3433)
Developer updates:
- Deps: update to rocksdb 0.23 (#3456)
- Refactor: Use to_writer/from_reader across the codebase (#3443)
- adjust
Signature::name()
to returnOption<String>
instead offilename()
andmd5sum()
(#3434) - bump version to 4.8.13-dev (#3474)
- fix comment in _set_num_scaled (#3451)
- propagate zipfile errors (#3431)
- update rust CHANGELOG in preparation for r0.18.0 (#3450)
- CI: github actions updates (#3476)
Dependabot updates:
- Bump itertools from 0.13.0 to 0.14.0 (#3471)
- Bump needletail from 0.6.0 to 0.6.1 (#3427)
- Bump proptest from 1.5.0 to 1.6.0 (#3437)
- Bump roaring from 0.10.7 to 0.10.8 (#3423)
- Bump roaring from 0.10.8 to 0.10.9 (#3438)
- Bump serde from 1.0.215 to 1.0.216 (#3436)
- Bump serde from 1.0.216 to 1.0.217 (#3464)
- Bump serde_json from 1.0.133 to 1.0.134 (#3453)
- Bump statrs from 0.17.1 to 0.18.0 (#3426)
- Bump tempfile from 3.14.0 to 3.15.0 (#3472)
- Bump thiserror from 2.0.3 to 2.0.6 (#3425)
- Bump thiserror from 2.0.6 to 2.0.7 (#3435)
- Bump thiserror from 2.0.7 to 2.0.8 (#3448)
- Bump thiserror from 2.0.8 to 2.0.9 (#3452)
- Update maturin requirement from <1.8.0,>=1 to >=1,<1.9.0 (#3465)
- [pre-commit.ci] pre-commit autoupdate (#3428)
- [pre-commit.ci] pre-commit autoupdate (#3439)
- [pre-commit.ci] pre-commit autoupdate (#3454)
- [pre-commit.ci] pre-commit autoupdate (#3473)