MRG: 4.8.13 release branch

[ctb]

Release issue: #3481

---

NOTE: This release adds basic support for skipmers, but they are not
yet fully supported.

Minor new features:

• add genbank plant db to docs (MRG: add genbank plant db to docs #3429)
• add skipmer capacity to sourmash python layer via ffi (MRG: add skipmer capacity to sourmash python layer via ffi #3446)
• add skipmers; switch to reading frame approach for translation, skipmers (MRG: add skipmers; switch to reading frame approach for translation, skipmers #3395)
• additional moltype specification needed for sig downsample with skipmers (MRG: additional moltype specification needed for sig downsample with skipmers #3457)
• update with misc animal genomes (MRG: update with misc animal genomes #3422)

Cleanup and documentation updates:

• add comment about semver and column headings (MRG: add comment about semver and column headings #3433)

Developer updates:

• Deps: update to rocksdb 0.23 (Deps: update to rocksdb 0.23 #3456)
• Refactor: Use to_writer/from_reader across the codebase (Refactor: Use to_writer/from_reader across the codebase #3443)
• adjust Signature::name() to return Option<String> instead of filename() and md5sum() (MRG: adjust Signature::name() to return Option<String> instead of filename() and md5sum() #3434)
• bump version to 4.8.13-dev (MRG: bump version to 4.8.13-dev #3474)
• fix comment in _set_num_scaled (MRG: fix comment in _set_num_scaled #3451)
• propagate zipfile errors (MRG: propagate zipfile errors #3431)
• update rust CHANGELOG in preparation for r0.18.0 (MRG: update rust CHANGELOG in preparation for r0.18.0 #3450)
• CI: github actions updates (CI: github actions updates #3476)

Dependabot updates:

• Bump itertools from 0.13.0 to 0.14.0 (Bump itertools from 0.13.0 to 0.14.0 #3471)
• Bump needletail from 0.6.0 to 0.6.1 (Bump needletail from 0.6.0 to 0.6.1 #3427)
• Bump proptest from 1.5.0 to 1.6.0 (Bump proptest from 1.5.0 to 1.6.0 #3437)
• Bump roaring from 0.10.7 to 0.10.8 (Bump roaring from 0.10.7 to 0.10.8 #3423)
• Bump roaring from 0.10.8 to 0.10.9 (Bump roaring from 0.10.8 to 0.10.9 #3438)
• Bump serde from 1.0.215 to 1.0.216 (Bump serde from 1.0.215 to 1.0.216 #3436)
• Bump serde from 1.0.216 to 1.0.217 (Bump serde from 1.0.216 to 1.0.217 #3464)
• Bump serde_json from 1.0.133 to 1.0.134 (Bump serde_json from 1.0.133 to 1.0.134 #3453)
• Bump statrs from 0.17.1 to 0.18.0 (Bump statrs from 0.17.1 to 0.18.0 #3426)
• Bump tempfile from 3.14.0 to 3.15.0 (Bump tempfile from 3.14.0 to 3.15.0 #3472)
• Bump thiserror from 2.0.3 to 2.0.6 (Bump thiserror from 2.0.3 to 2.0.6 #3425)
• Bump thiserror from 2.0.6 to 2.0.7 (Bump thiserror from 2.0.6 to 2.0.7 #3435)
• Bump thiserror from 2.0.7 to 2.0.8 (Bump thiserror from 2.0.7 to 2.0.8 #3448)
• Bump thiserror from 2.0.8 to 2.0.9 (Bump thiserror from 2.0.8 to 2.0.9 #3452)
• Update maturin requirement from <1.8.0,>=1 to >=1,<1.9.0 (Update maturin requirement from <1.8.0,>=1 to >=1,<1.9.0 #3465)
• [pre-commit.ci] pre-commit autoupdate ([pre-commit.ci] pre-commit autoupdate #3428)
• [pre-commit.ci] pre-commit autoupdate ([pre-commit.ci] pre-commit autoupdate #3439)
• [pre-commit.ci] pre-commit autoupdate ([pre-commit.ci] pre-commit autoupdate #3454)
• [pre-commit.ci] pre-commit autoupdate ([pre-commit.ci] pre-commit autoupdate #3473)

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 87.96%. Comparing base (8e96904) to head (acd0414).
Report is 1 commits behind head on latest.

Additional details and impacted files

@@            Coverage Diff             @@
##           latest    #3482      +/-   ##
==========================================
- Coverage   88.02%   87.96%   -0.06%     
==========================================
  Files         137      137              
  Lines       22312    22312              
  Branches     2225     2225              
==========================================
- Hits        19640    19627      -13     
- Misses       2359     2372      +13     
  Partials      313      313              

Flag	Coverage Δ
hypothesis-py	25.43% <ø> (ø)
python	92.24% <ø> (-0.08%)	⬇️
rust	82.04% <ø> (-0.04%)	⬇️

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