Skip to content

Commit

Permalink
fix phenotype upload; ensure timestamp use most common time zone form…
Browse files Browse the repository at this point in the history 
…at; add genetic file parser for accessions and locations; fix missing values and empty traits; display wait message while querying for geno protocols; add doubly resolvable row - column design; fix field layout view when using cross unique ids or family names in trial; update _BrAPIv2_phenotyping.t timestamps; fix csv file extension for kasp data download; other improvements.
  • Loading branch information
@lukasmueller
lukasmueller committed Jul 9, 2024
1 parent 7b19687 commit b3c3def
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion cxgn/sgn
Submodule sgn updated 53 files
+116 −0 R/DRRC.r
+9 −2 js/source/entries/fieldmap.js
+83 −3 js/source/legacy/CXGN/BreedersToolbox/AddTrial.js
+13 −12 js/source/legacy/solGS/cluster.js
+175 −178 js/source/legacy/solGS/correlation.js
+154 −84 js/source/legacy/solGS/kinship.js
+1 −2 js/source/legacy/solGS/pca.js
+38 −28 lib/CXGN/BrAPI/v2/ObservationUnits.pm
+484 −0 lib/CXGN/File/Parse.pm
+16 −0 lib/CXGN/File/Parse/Plugin/CSV.pm
+103 −0 lib/CXGN/File/Parse/Plugin/Excel.pm
+119 −0 lib/CXGN/File/Parse/Plugin/Plain.pm
+16 −0 lib/CXGN/File/Parse/Plugin/SSV.pm
+16 −0 lib/CXGN/File/Parse/Plugin/TSV.pm
+16 −0 lib/CXGN/File/Parse/Plugin/TXT.pm
+16 −0 lib/CXGN/File/Parse/Plugin/XLS.pm
+16 −0 lib/CXGN/File/Parse/Plugin/XLSX.pm
+2 −2 lib/CXGN/Image/Search.pm
+5 −0 lib/CXGN/Location/ParseUpload/Plugin/LocationsExcelFormat.pm
+123 −0 lib/CXGN/Location/ParseUpload/Plugin/LocationsGeneric.pm
+14 −12 lib/CXGN/Phenotypes/Search/Native.pm
+6 −2 lib/CXGN/Phenotypes/StorePhenotypes.pm
+293 −0 lib/CXGN/Stock/ParseUpload/Plugin/AccessionsGeneric.pm
+4 −0 lib/CXGN/Stock/ParseUpload/Plugin/AccessionsXLS.pm
+6 −2 lib/CXGN/TimeUtils.pm
+1 −1 lib/CXGN/Trial/TrialDesign.pm
+100 −53 lib/CXGN/Trial/TrialDesign/Plugin/DRRC.pm
+38 −14 lib/CXGN/Trial/TrialLayoutSearch.pm
+2 −2 lib/SGN/Controller/AJAX/Accessions.pm
+1 −1 lib/SGN/Controller/AJAX/Locations.pm
+1 −1 lib/SGN/Controller/AJAX/Trial.pm
+12 −12 lib/SGN/Controller/AJAX/TrialMetadata.pm
+1 −1 lib/SGN/Controller/BreedersToolbox/Download.pm
+10 −5 lib/SGN/Controller/Root.pm
+3 −2 mason/breeders_toolbox/add_accessions_dialogs.mas
+14 −0 mason/breeders_toolbox/trial/trial_create_dialogs.mas
+1 −1 mason/breeders_toolbox/trial/trial_upload_dialogs.mas
+2 −0 mason/breeders_toolbox/trial/update_experimental_design_type.mas
+3 −5 mason/breeders_toolbox/upload_locations_dialogs.mas
+34 −0 mason/help/file_upload_type.mas
+1 −1 mason/solgs/genotyping_protocol/index.mas
+15 −12 mason/solgs/tools/correlation/analysis.mas
+1 −1 mason/solgs/tools/correlation/genetic_correlation.mas
+1 −1 mason/solgs/tools/genetic_gain/multi_traits_genetic_gain.mas
+1 −1 mason/solgs/tools/genetic_gain/single_trait_genetic_gain.mas
+14 −12 mason/solgs/tools/kinship/analysis.mas
+ − t/data/location_upload/location_test_file.xls
+ − t/data/location_upload/location_test_file.xlsx
+0 −2 t/selenium2/03_dataset/dataset.t
+22 −35 t/selenium2/solgs/correlation.t
+55 −108 t/selenium2/solgs/kinship.t
+2 −2 t/unit_fixture/CXGN/Uploading/LocationUpload.t
+46 −46 t/unit_mech/AJAX/_BrAPIv2_phenotyping.t

0 comments on commit b3c3def

Please sign in to comment.