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Issues: snakemake/snakemake
Announcement: Snakemake 8.0 released, including the removal o...
#2409
opened Aug 15, 2023 by
johanneskoester
Open
21
Announcement: Snakemake hackathon 2025 at CERN, call for part...
#3123
opened Oct 7, 2024 by
johanneskoester
Open
1
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Issues list
Add key to rule definitions to postpone scheduling of a job based on runtime-dependent user criteria
enhancement
New feature or request
#3209
opened Nov 15, 2024 by
wiedenhoeft
Modernize logging and support for monitoring as plugins
enhancement
New feature or request
#3207
opened Nov 14, 2024 by
JRodez
Snakemake resources does not trigger GPU node-pool on kubernetes.
bug
Something isn't working
#3205
opened Nov 13, 2024 by
mrburke00
conda info --json returned non-zero exit status 127
bug
Something isn't working
#3202
opened Nov 12, 2024 by
farchaab
Support for wrappers in private repositories
enhancement
New feature or request
#3194
opened Nov 10, 2024 by
mhorlacher
snakemake --cleanup-metadata appears broken in 8.24.0 and 8.25.2
bug
Something isn't working
#3193
opened Nov 8, 2024 by
daknuett
AttributeError when using existing conda environment with checkpoint
bug
Something isn't working
#3192
opened Nov 7, 2024 by
johnne
locally detected cores determine remote max thread level
bug
Something isn't working
#3191
opened Nov 7, 2024 by
cmeesters
Global container image specification overridden by module import
bug
Something isn't working
#3186
opened Nov 6, 2024 by
laf070810
rust-script >= 0.23.0 fails with current version of snakemake
bug
Something isn't working
#3183
opened Nov 4, 2024 by
jackerschott
Add more details to log lines like "Finished job 7."
enhancement
New feature or request
#3178
opened Oct 31, 2024 by
corneliusroemer
Helper function for turning Python filenames into module names (or vice versa)
enhancement
New feature or request
#3177
opened Oct 30, 2024 by
edbennett
Using snakemake -q all hides SLURM error messages
bug
Something isn't working
#3173
opened Oct 28, 2024 by
peterjc
Clarify default behavior of snakemake without "--cores" option
enhancement
New feature or request
#3167
opened Oct 23, 2024 by
fhg-isi
More specific recommendations in Raise CreateCondaEnvironmentException: Conda must be version 24.7.1 or later,
enhancement
New feature or request
#3163
opened Oct 22, 2024 by
tito-abbo
Check for updated inputs while executing DAG
enhancement
New feature or request
#3161
opened Oct 21, 2024 by
WeatherGod
Using snakemake -q all does not silence stdout and stderr from rules
bug
Something isn't working
#3152
opened Oct 17, 2024 by
peterjc
Callbacks from DAG .execute_workflow() needed for progress bar
enhancement
New feature or request
#3151
opened Oct 17, 2024 by
peterjc
Sequential execution in one script of parallely defined rules.
enhancement
New feature or request
#3143
opened Oct 15, 2024 by
gatoniel
--generate-unit-tests
will raise error in 8.20.1
or newer version
bug
#3137
opened Oct 13, 2024 by
jiangyun-fun
Question: Can you make an execute a snakemake workflow in pure python?
#3136
opened Oct 11, 2024 by
harrymatthews50
Running Snakemake --touch gives PulpSolverError
bug
Something isn't working
#3128
opened Oct 8, 2024 by
tbenavi1
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