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26 Open 52 Closed
26 Open 52 Closed
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Issues list

sacctmgr error when running in job context
#164 opened Nov 4, 2024 by jprnz
1
Localrules are ignored for grouped jobs
#162 opened Nov 1, 2024 by NoahHenrikKleinschmidt
1
Allow simultaneous use of envmodules and conda environment
#156 opened Oct 14, 2024 by gatoniel
3
--software-deployment-method argument has a different behaviour using CLI and profiles
#151 opened Sep 20, 2024 by ArthurDondi
1
Add seff support to evaluate resource allocation after executation
#147 opened Sep 11, 2024 by sreichl
2
Snakemake fails to parse sbatch output to get slurm_jobid
#146 opened Sep 10, 2024 by kennethabarr
3
threads directive of a rule not taken into account
#145 opened Sep 7, 2024 by ArthurDondi
5
threads directive of a rule not taken into account when running through slurm
#141 opened Aug 30, 2024 by blaiseli
3
Job submission with --prioritize runs all at once, then stalls
#134 opened Aug 13, 2024 by KB1RD
4
snakemake exit with MissingOutputException when using --immediate-submit
#133 opened Aug 13, 2024 by sirintra
3
job submitted in login node not being cancelled if all rules fail?
#127 opened Aug 7, 2024 by ifariasg
15
Way to make logging go to same logs as when running locally?
#123 opened Aug 3, 2024 by hermidalc
3
Can't unquote in slurm_extra
#120 opened Jul 31, 2024 by willboulton
1
Best practice: a short-running rule called many times
#115 opened Jul 19, 2024 by bdelepine
Select partition automatically
#106 opened Jun 23, 2024 by SilasK
15
Log file and comment string are not escaped
#105 opened Jun 20, 2024 by denisalevi
Separately logging stdout and stderr
#95 opened May 23, 2024 by bentyeh
6
option to set the log directory?
#94 opened May 23, 2024 by jbloom
5
Setting memory twice when submitting with slurm executor
#75 opened Apr 19, 2024 by kwells4
14
Determine dynamic resources depending on retry reason? discussion ongoing discussion, give your input
#65 opened Apr 11, 2024 by nikostr
4
Dynamic runtime resource fails with SLURM
#62 opened Apr 5, 2024 by nikostr
3
Dynamic determination of queue enhancement New feature or request
#61 opened Apr 4, 2024 by johanneskoester
3
Differences in SLURM command between what Snakemake says it runs and what is actually run
#57 opened Apr 2, 2024 by stefmldk
8
Job status query fails if slurm accounting storage is disabled
#38 opened Feb 23, 2024 by prs513rosewood
4
sbatch call does not escape quotes in exec_job
#29 opened Jan 30, 2024 by ebete
@cmeesters
15
ProTip! no:milestone will show everything without a milestone.