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Merge tag 'ctsm5.2.015' into new_rawpftlai
Update submodule tags to pass runoff from cism to rof - Update MOSART, CMEPS, and CISM so CISM runoff goes to ROF rather than CTSM - Update RTM with fix needed for Paleo LGM work Contributors: @mvertens, @jedwards4b, @billsacks, @Katetc, @ekluzek, @slevis-lmwg Fixes ESCOMP#2590 Update CMEPS/MOSART/CISM/RTM tags Fixes ESCOMP/RTM#50 Likely wrong RTM river flux to MOM6 within cesm2_3_beta17 Differences in namelist 'mosart_inparm': missing variable: 'do_rtmflood' missing variable: 'finidat_rtm' missing variable: 'frivinp_rtm' missing variable: 'rtmhist_fexcl1' missing variable: 'rtmhist_fexcl2' missing variable: 'rtmhist_fexcl3' missing variable: 'rtmhist_fincl1' missing variable: 'rtmhist_fincl2' missing variable: 'rtmhist_fincl3' missing variable: 'rtmhist_mfilt' missing variable: 'rtmhist_ndens' missing variable: 'rtmhist_nhtfrq' found extra variable: 'budget_frq' found extra variable: 'fexcl1' found extra variable: 'fexcl2' found extra variable: 'fexcl3' found extra variable: 'fincl1' found extra variable: 'fincl2' found extra variable: 'fincl3' found extra variable: 'finidat' found extra variable: 'frivinp' found extra variable: 'mfilt' found extra variable: 'mosart_euler_calc' found extra variable: 'mosart_tracers' found extra variable: 'ndens' found extra variable: 'nhtfrq' found extra variable: 'use_halo_option' Changes answers - what code configurations: mosart and rtm - what platforms/compilers: all - nature of change: mosart roundoff; rtm larger than roundoff due to bug fix; the latter also affects bgc variables We are ignoring strange diffs from baseline in two tests in variable FATES_TRANSITION_MATRIX_LULU as explained in issue ESCOMP#2656.
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| Original file line number | Diff line number | Diff line change |
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| # This is a git submodule file with additional support for | ||
| # git-fleximod (https://github.com/ESMCI/git-fleximod) | ||
| # | ||
| # The additional flags supported by git-fleximod are | ||
| # fxtag - the tag associated with the submodule, this tag can be tested for | ||
| # consistancy with the submodule hash using git-fleximod status | ||
| # the hash can be updated to the tag using git-fleximod update | ||
| # | ||
| # fxrequired - indicates if a given submodule should be checked out on install | ||
| # submoudules can be toplevel or internal and required or optional | ||
| # toplevel means that the submodule should only be checked out if the | ||
| # module is the toplevel of the git repo (is not a submodule itself) | ||
| # internal means that the submodule is needed by the component whether | ||
| # the component is toplevel or the submodule of another repo | ||
| # required means that the submodule should always be checked out | ||
| # optional means that the submodule should only be checked out if the | ||
| # optional flag is provided to git-fleximod or the submodule name is | ||
| # explicitly listed on the git-fleximod command line. | ||
| # | ||
| # fxsparse - this is a path to a git sparse checkout file indicating that the | ||
| # submodule should be checked out in sparse mode | ||
| # | ||
| # fxDONOTUSEurl - this field is used by git-fleximod test to insure that the url is pointing | ||
| # to the official url of the repo and not to an unofficial fork. | ||
| # It is intended for use of github workflows to test commits to protected | ||
| # repository branches. | ||
| # | ||
| [submodule "fates"] | ||
| path = src/fates | ||
| url = https://github.com/NGEET/fates | ||
| fxtag = sci.1.77.1_api.36.0.0 | ||
| fxrequired = AlwaysRequired | ||
| # Standard Fork to compare to with "git fleximod test" to ensure personal forks aren't committed | ||
| fxDONOTUSEurl = https://github.com/NCAR/fates-release | ||
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| [submodule "cism"] | ||
| path = components/cism | ||
| url = https://github.com/ESCOMP/CISM-wrapper | ||
| fxtag = cismwrap_2_2_002 | ||
| fxrequired = ToplevelRequired | ||
| # Standard Fork to compare to with "git fleximod test" to ensure personal forks aren't committed | ||
| fxDONOTUSEurl = https://github.com/ESCOMP/CISM-wrapper | ||
|
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| [submodule "rtm"] | ||
| path = components/rtm | ||
| url = https://github.com/ESCOMP/RTM | ||
| fxtag = rtm1_0_80 | ||
| fxrequired = ToplevelRequired | ||
| # Standard Fork to compare to with "git fleximod test" to ensure personal forks aren't committed | ||
| fxDONOTUSEurl = https://github.com/ESCOMP/RTM | ||
|
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| [submodule "mosart"] | ||
| path = components/mosart | ||
| url = https://github.com/ESCOMP/MOSART | ||
| fxtag = mosart1.1.02 | ||
| fxrequired = ToplevelRequired | ||
| # Standard Fork to compare to with "git fleximod test" to ensure personal forks aren't committed | ||
| fxDONOTUSEurl = https://github.com/ESCOMP/MOSART | ||
|
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| [submodule "mizuRoute"] | ||
| path = components/mizuRoute | ||
| url = https://github.com/ESCOMP/mizuRoute | ||
| fxtag = cesm-coupling.n02_v2.1.2 | ||
| fxrequired = ToplevelRequired | ||
| # Standard Fork to compare to with "git fleximod test" to ensure personal forks aren't committed | ||
| fxDONOTUSEurl = https://github.com/ESCOMP/mizuRoute | ||
|
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| [submodule "ccs_config"] | ||
| path = ccs_config | ||
| url = https://github.com/ESMCI/ccs_config_cesm.git | ||
| fxtag = ccs_config_cesm1.0.0 | ||
| fxrequired = ToplevelRequired | ||
| # Standard Fork to compare to with "git fleximod test" to ensure personal forks aren't committed | ||
| fxDONOTUSEurl = https://github.com/ESMCI/ccs_config_cesm.git | ||
|
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||
| [submodule "cime"] | ||
| path = cime | ||
| url = https://github.com/ESMCI/cime | ||
| fxtag = cime6.0.246 | ||
| fxrequired = ToplevelRequired | ||
| # Standard Fork to compare to with "git fleximod test" to ensure personal forks aren't committed | ||
| fxDONOTUSEurl = https://github.com/ESMCI/cime | ||
|
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||
| [submodule "cmeps"] | ||
| path = components/cmeps | ||
| url = https://github.com/ESCOMP/CMEPS.git | ||
| fxtag = cmeps0.14.77 | ||
| fxrequired = ToplevelRequired | ||
| # Standard Fork to compare to with "git fleximod test" to ensure personal forks aren't committed | ||
| fxDONOTUSEurl = https://github.com/ESCOMP/CMEPS.git | ||
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| [submodule "cdeps"] | ||
| path = components/cdeps | ||
| url = https://github.com/ESCOMP/CDEPS.git | ||
| fxtag = cdeps1.0.34 | ||
| fxrequired = ToplevelRequired | ||
| # Standard Fork to compare to with "git fleximod test" to ensure personal forks aren't committed | ||
| fxDONOTUSEurl = https://github.com/ESCOMP/CDEPS.git | ||
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| [submodule "share"] | ||
| path = share | ||
| url = https://github.com/ESCOMP/CESM_share | ||
| fxtag = share1.0.19 | ||
| fxrequired = ToplevelRequired | ||
| # Standard Fork to compare to with "git fleximod test" to ensure personal forks aren't committed | ||
| fxDONOTUSEurl = https://github.com/ESCOMP/CESM_share | ||
|
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||
| [submodule "mct"] | ||
| path = libraries/mct | ||
| url = https://github.com/MCSclimate/MCT | ||
| fxtag = MCT_2.11.0 | ||
| fxrequired = ToplevelRequired | ||
| # Standard Fork to compare to with "git fleximod test" to ensure personal forks aren't committed | ||
| fxDONOTUSEurl = https://github.com/MCSclimate/MCT | ||
|
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||
| [submodule "parallelio"] | ||
| path = libraries/parallelio | ||
| url = https://github.com/NCAR/ParallelIO | ||
| fxtag = pio2_6_2 | ||
| fxrequired = ToplevelRequired | ||
| # Standard Fork to compare to with "git fleximod test" to ensure personal forks aren't committed | ||
| fxDONOTUSEurl = https://github.com/NCAR/ParallelIO | ||
|
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| [submodule "doc-builder"] | ||
| path = doc/doc-builder | ||
| url = https://github.com/ESMCI/doc-builder | ||
| fxtag = v1.0.8 | ||
| fxrequired = ToplevelOptional | ||
| # Standard Fork to compare to with "git fleximod test" to ensure personal forks aren't committed | ||
| fxDONOTUSEurl = https://github.com/ESMCI/doc-builder |
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| name: pre-commit | ||
| on: | ||
| pull_request: | ||
| push: | ||
| branches: [main] | ||
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| jobs: | ||
| pre-commit: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v3 | ||
| - uses: actions/setup-python@v3 | ||
| - uses: pre-commit/[email protected] |
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| # Run this job on pushes to `main`, and for pull requests. If you don't specify | ||
| # `branches: [main], then this actions runs _twice_ on pull requests, which is | ||
| # annoying. | ||
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|
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| on: | ||
| push: | ||
| branches: [main] | ||
| pull_request: | ||
| branches: [main] | ||
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| jobs: | ||
| test: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
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||
| # If you wanted to use multiple Python versions, you'd have specify a matrix in the job and | ||
| # reference the matrixe python version here. | ||
| - uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: '3.9' | ||
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||
| # Cache the installation of Poetry itself, e.g. the next step. This prevents the workflow | ||
| # from installing Poetry every time, which can be slow. Note the use of the Poetry version | ||
| # number in the cache key, and the "-0" suffix: this allows you to invalidate the cache | ||
| # manually if/when you want to upgrade Poetry, or if something goes wrong. This could be | ||
| # mildly cleaner by using an environment variable, but I don't really care. | ||
| - name: cache poetry install | ||
| uses: actions/cache@v4 | ||
| with: | ||
| path: ~/.local | ||
| key: poetry-1.7.1 | ||
|
|
||
| # Install Poetry. You could do this manually, or there are several actions that do this. | ||
| # `snok/install-poetry` seems to be minimal yet complete, and really just calls out to | ||
| # Poetry's default install script, which feels correct. I pin the Poetry version here | ||
| # because Poetry does occasionally change APIs between versions and I don't want my | ||
| # actions to break if it does. | ||
| # | ||
| # The key configuration value here is `virtualenvs-in-project: true`: this creates the | ||
| # venv as a `.venv` in your testing directory, which allows the next step to easily | ||
| # cache it. | ||
| - uses: snok/install-poetry@v1 | ||
| with: | ||
| version: 1.7.1 | ||
| virtualenvs-create: true | ||
| virtualenvs-in-project: true | ||
|
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| # Cache your dependencies (i.e. all the stuff in your `pyproject.toml`). Note the cache | ||
| # key: if you're using multiple Python versions, or multiple OSes, you'd need to include | ||
| # them in the cache key. I'm not, so it can be simple and just depend on the poetry.lock. | ||
| - name: cache deps | ||
| id: cache-deps | ||
| uses: actions/cache@v4 | ||
| with: | ||
| path: .venv | ||
| key: pydeps-${{ hashFiles('**/poetry.lock') }} | ||
|
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||
| # Install dependencies. `--no-root` means "install all dependencies but not the project | ||
| # itself", which is what you want to avoid caching _your_ code. The `if` statement | ||
| # ensures this only runs on a cache miss. | ||
| - run: poetry install --no-interaction --no-root | ||
| if: steps.cache-deps.outputs.cache-hit != 'true' | ||
|
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||
| # Now install _your_ project. This isn't necessary for many types of projects -- particularly | ||
| # things like Django apps don't need this. But it's a good idea since it fully-exercises the | ||
| # pyproject.toml and makes that if you add things like console-scripts at some point that | ||
| # they'll be installed and working. | ||
| - run: poetry install --no-interaction | ||
|
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||
| # And finally run tests. I'm using pytest and all my pytest config is in my `pyproject.toml` | ||
| # so this line is super-simple. But it could be as complex as you need. | ||
| - run: | | ||
| git config --global user.name "${GITHUB_ACTOR}" | ||
| git config --global user.email "${GITHUB_ACTOR_ID}+${GITHUB_ACTOR}@users.noreply.github.com" | ||
| poetry run pytest | ||
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| exclude: ^utils/.*$ | ||
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| repos: | ||
| - repo: https://github.com/pre-commit/pre-commit-hooks | ||
| rev: v4.0.1 | ||
| hooks: | ||
| - id: end-of-file-fixer | ||
| - id: trailing-whitespace | ||
| - repo: https://github.com/psf/black | ||
| rev: 22.3.0 | ||
| hooks: | ||
| - id: black | ||
| - repo: https://github.com/PyCQA/pylint | ||
| rev: v2.11.1 | ||
| hooks: | ||
| - id: pylint | ||
| args: | ||
| - --disable=I,C,R,logging-not-lazy,wildcard-import,unused-wildcard-import,fixme,broad-except,bare-except,eval-used,exec-used,global-statement,logging-format-interpolation,no-name-in-module,arguments-renamed,unspecified-encoding,protected-access,import-error,no-member |
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| Copyright 2024 NSF National Center for Atmospheric Sciences (NCAR) | ||
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| Permission is hereby granted, free of charge, to any person obtaining | ||
| a copy of this software and associated documentation files (the | ||
| “Software”), to deal in the Software without restriction, including | ||
| without limitation the rights to use, copy, modify, merge, publish, | ||
| distribute, sublicense, and/or sell copies of the Software, and to | ||
| permit persons to whom the Software is furnished to do so, subject to | ||
| the following conditions: | ||
|
|
||
| The above copyright notice and this permission notice shall be | ||
| included in all copies or substantial portions of the Software. | ||
|
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| THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, | ||
| EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF | ||
| MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND | ||
| NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE | ||
| LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION | ||
| OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION | ||
| WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. |
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