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BioSimulator.jl

A stochastic simulation framework in Julia.

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Installation

using Pkg
Pkg.add("https://github.com/alanderos91/BioSimulator.jl.git", "BioSimulator")

Documentation

  • STABLEmost recently tagged version of the documentation.
  • LATESTin-development version of the documentation.

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Citation

If you use BioSimulator.jl in an academic manuscript, please cite:

Landeros A, Stutz, T, Keys, KL, Alekseyenko, A, Sinsheimer, JS, Lange, K, & Sehl, ME (2018) BioSimulator. jl: Stochastic simulation in Julia. Computer Methods and Programs in Biomedicine 167, 23-35. (journal)(preprint)

@article{landeros2018biosimulator,
    title     = {{BioSimulator.jl: Stochastic simulation in Julia}},
    author    = {Landeros, Alfonso and Stutz, Timothy and Keys, Kevin L and Alekseyenko, Alexander and Sinsheimer, Janet S and Lange, Kenneth and Sehl, Mary E},
    journal   = {{Computer Methods and Programs in Biomedicine}},
    volume    = {167},
    pages     = {23--35},
    year      = {2018},
    publisher = {Elsevier}
}

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A stochastic simulation framework in Julia.

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  • Julia 94.5%
  • Papyrus 2.2%
  • Shell 1.9%
  • Python 1.4%