CI #24
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| name: CI | |
| on: | |
| # GitHub has started calling new repo's first branch "main" https://github.com/github/renaming | |
| # The cookiecutter uses the "--initial-branch" flag when it runs git-init | |
| push: | |
| branches: | |
| - "main" | |
| pull_request: | |
| branches: | |
| - "main" | |
| schedule: | |
| # Weekly tests run on main by default: | |
| # Scheduled workflows run on the latest commit on the default or base branch. | |
| # (from https://help.github.com/en/actions/reference/events-that-trigger-workflows#scheduled-events-schedule) | |
| - cron: "0 0 * * 0" | |
| workflow_dispatch: | |
| jobs: | |
| test: | |
| name: Test on ${{ matrix.os }}, Python ${{ matrix.python-version }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [macOS-latest, ubuntu-latest] #, windows-latest] # AmberTools is not currently installable on Windows | |
| python-version: ["3.11"] #, "3.12"] # intend to support more recent Python version eventually, but tooling is built around 3.11 only for now | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Additional info about the build | |
| shell: bash | |
| run: | | |
| uname -a | |
| df -h | |
| ulimit -a | |
| # More info on options: https://github.com/marketplace/actions/setup-micromamba | |
| - uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| generate-run-shell: false # recommended fix to weird ENOENT error (https://github.com/mamba-org/setup-micromamba/issues/130) | |
| environment-file: devtools/conda-envs/test-env.yml | |
| environment-name: test | |
| condarc: | | |
| channels: | |
| - conda-forge | |
| - defaults | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| - name: Install package | |
| # conda setup requires this special shell | |
| shell: bash -l {0} | |
| run: | | |
| python -m pip install . --no-deps | |
| micromamba list | |
| - name: Run tests | |
| # conda setup requires this special shell | |
| shell: bash -l {0} | |
| run: | | |
| pytest -v --cov=polymerist --cov-report=xml --color=yes polymerist/tests/ | |
| - name: CodeCov | |
| uses: codecov/codecov-action@v1 | |
| with: | |
| file: ./coverage.xml | |
| flags: unittests | |
| name: codecov-${{ matrix.os }}-py${{ matrix.python-version }} |