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unikmer v0.12.0

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@shenwei356 shenwei356 released this 24 Sep 07:36
· 117 commits to master since this release
  • v0.12.0
    • unikmer:
      • support longer k (k>32) by saving ntHash.
      • new flag -nocheck-file for not checking binary file.
    • new commands:
      • unikmer db index: constructing index from binary files
      • unikmer db info: printing information of index file
      • unikmer db search: searching sequence from index database
    • unikmer rfilter: change format of rank order file.
    • unikmer inter/union: speedup for single input file.
    • unikmer concat:
      • new flag -t/--taxid for assigning global taxid, this can slightly reduce file size.
      • new flag -n/--number for setting number of k-mers.
    • unikmer num:
      • new flag -f/--force for counting k-mers.
    • unikmer locate: output in BED6.
    • unikmer locate/uniqs: support multiple genome files.
    • unikmer uniqs:
      • stricter multiple mapping limit.
      • new flag -W/--seqs-in-a-file-as-one-genome.
    • unikmer count:
      • new flag -u/--unique for output unique (single copy) kmers