KMCP v0.9.0

Changes

v0.9.0 - 2022-09-28

• compute:
  • smaller output files and faster speed.
  • more even genome splitting.
• index:
  • faster speed due to smaller input files.
• search:
  • more accurate and smaller query FPR following Theorem 2 in SBT paper, instead of the Chernoff bound.
  • change the default value of -f/--max-fpr from 0.05 to 0.01.
  • 10-20% speedup.
• profile:
  • more accurate abundance estimation using EM algorithm.
  • change the default value of -f/--max-fpr from 0.05 to 0.01.
  • mode 0: change the default value of -H/--min-hic-ureads-qcov from 0.55 to 0.7.
  • increase float width of reference coverage in KMCP profile format from 2 to 6.
• util query-fpr:
  • compute query FPR following Theorem 2 in SBT paper, instead of the Chernoff bound.
• new commands:
  • utils split-genomes for splitting genomes into chunks.
  • utils ref-info for printing information of reference (chunks), including the number of k-mers
    and the actual false-positive rate.