FEATURE: add seqan3::default_printer

[marehr]

This PR will resolve seqan/product_backlog#63.

This issue is a long-standing open to-do of mine. I hope that you can take it over and push it over the finishing line. The state of the current PR is just a draft of an idea.

I'll comment on multiple code locations to point out the advantages of the new design.

The old design

The major idea of the design is due to the following observation:

We use overload resolution and in particular overload ordering via concepts to determine the order in which we should print

Just to give a small example (the more down, the more specialized):

  std::cout //-printable [1]
< seqan3::tuple_like // [4]
< std::ranges::input_range // [2]
< std::vector<uint8_t> // [3]
< seqan3::sequence // [3]
< char * // [2]

  std::cout //-printable [1]
< char // [5]
< seqan3::tuple_like // [4]
< seqan3::alphabet // [5]
< seqan3::mask // [6]

NOTE: that using concepts as overload resolution always uses a partially ordered set, which can be depicted by as a Hasse Diagram, and by using the except clauses via requires we give it a total order.

The new design

Before anything, note that the new design does not break any existing code. As existing seqan3::debugstream << overloads, still take place in overload resolution.

The idea is simple:

• Have a list of printers.
• The order of the printers dictates in which order an object should be printed.
• We allow that multiple printers might be viable to print a type.
• Each printer<type> either has a function object / lambda print or not; depending on whether the printer can print that type or not (implemented by template specialization)
• We can explicitly use printer in other printer's, if we know that only that overload should be used,

So put together: For a given type, ask every printer in order whether it can print that type and the first one to answer yes, is the selected printer.

---

[1] If all overloads do not work, use std::ostream

seqan3/include/seqan3/core/debug_stream/debug_stream_type.hpp

Lines 242 to 247 in 6b681fb

	template <typename char_t, typename t>
	debug_stream_type<char_t> & operator<<(debug_stream_type<char_t> & s, t && v)
	{
	(*s.stream) << v;
	return s;
	}

[2] Use this for all std::ranges::input_ranges except if type is something like std::filesystem (type == range_value_t) or char *

seqan3/include/seqan3/core/debug_stream/range.hpp

Lines 96 to 98 in 6b681fb

	template <typename char_t, std::ranges::input_range rng_t>
	inline debug_stream_type<char_t> & operator<<(debug_stream_type<char_t> & s, rng_t && r)
	requires detail::debug_stream_range_guard<rng_t>

seqan3/include/seqan3/core/debug_stream/range.hpp

Lines 38 to 45 in 6b681fb

	template <typename rng_t>
	concept debug_stream_range_guard = !
	std::same_as<std::remove_cvref_t<std::ranges::range_reference_t<rng_t>>,
	std::remove_cvref_t<rng_t>>
	&& // prevent recursive instantiation
	// exclude null-terminated strings:
	!(std::is_pointer_v<std::decay_t<rng_t>>
	&& std::same_as<std::remove_cvref_t<std::ranges::range_reference_t<rng_t>>, char>);

[3] Same as [2] where value_type is an alphabet but only if the alphabet is not an unsigned int (this condition has no test case?!)

seqan3/include/seqan3/core/debug_stream/range.hpp

Lines 138 to 141 in 6b681fb

	template <typename char_t, sequence sequence_t>
	inline debug_stream_type<char_t> & operator<<(debug_stream_type<char_t> & s, sequence_t && sequence)
	requires detail::debug_stream_range_guard<sequence_t>
	&& (!detail::is_uint_adaptation_v<std::remove_cvref_t<std::ranges::range_reference_t<sequence_t>>>)

[4] Use this for all std::tuple-like types except if it is a std::ranges::input_range (what is a tuple and ranges at the same time?!) and an seqan3::alphabet (basically seqan3::alphabet_tuple_base derived types)

seqan3/include/seqan3/core/debug_stream/tuple.hpp

Lines 53 to 56 in 6b681fb

	template <typename tuple_t>
	concept debug_streamable_tuple = !
	std::ranges::input_range<tuple_t> && !alphabet<tuple_t> && // exclude alphabet_tuple_base
	tuple_like<std::remove_cvref_t<tuple_t>>;

[5] Use this for all seqan3::alphabets except if it can be printed by std::cout (like char)

seqan3/include/seqan3/alphabet/detail/debug_stream_alphabet.hpp

Lines 30 to 32 in 6b681fb

	template <typename char_t, alphabet alphabet_t>
	inline debug_stream_type<char_t> & operator<<(debug_stream_type<char_t> & s, alphabet_t && l)
	requires (!output_stream_over<std::basic_ostream<char_t>, alphabet_t>)

[6] Type must be seqan3::semialphabet and seqan3::mask

seqan3/include/seqan3/alphabet/detail/debug_stream_alphabet.hpp

Lines 46 to 48 in 6b681fb

	template <typename char_t, seqan3::semialphabet alphabet_t>
	inline debug_stream_type<char_t> & operator<<(debug_stream_type<char_t> & s, alphabet_t && l)
	requires std::same_as<std::remove_cvref_t<alphabet_t>, mask>

[vercel]

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Name	Status	Preview	Updated (UTC)
seqan3	❌ Failed (Inspect)		Jan 30, 2024 4:16pm

[codecov]

Codecov Report

Attention: 2 lines in your changes are missing coverage. Please review.

Comparison is base (45897e6) 98.17% compared to head (1c3a75b) 98.19%.

Files	Patch %	Lines
...ude/seqan3/core/debug_stream/debug_stream_type.hpp	88.88%	2 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #3227      +/-   ##
==========================================
+ Coverage   98.17%   98.19%   +0.01%     
==========================================
  Files         269      270       +1     
  Lines       11854    11856       +2     
==========================================
+ Hits        11638    11642       +4     
+ Misses        216      214       -2     

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[marehr]

Here you can see that the actual definition whether a type should be printable by this printer is much easier than before.

[marehr]

This just shows that there are more overloads that I did not touch and it still compiles.

[marehr]

Once all seqan3::operator<< overloads are converted to the printer design

The following call

seqan3::debug_stream << any_obj << std::endl;

will always only invoke this single seqan3::debug_stream::operator<< function. Therefore, we have only a single point of entry for our complete printer logic. (should reduce compile time)

That means the stack trace will look something like this:

1. main()
2. seqan3::debug_stream << ...
3. seqan3::default_printer::print(...)
4. seqan3::tuple_printer::print(...)
5. seqan3::debug_stream << ...
6. seqan3::default_printer::print(...)
7. seqan3::sequence_printer::print(...)

This should result in nice and readable stack traces if for some reason a printer somehow fails.

[marehr]

This line is extremely valuable, since we can for the first time check whether a type is printable!!

That also means that for the first time we know that a certain type is NOT printable. So we can give diagnostics at runtime. Thus, no hard compile error just because a print overload was missing. This also means that every type is technically printable now.

This is a very valuable property for debugging. Imagine a major compiler change and something breaks in our print logic. We can comment out the complete code path for every printer and the code would still compile, since we accept EVERY type for printing.

Printing was always a major issue when doing such major compiler upgrades, since we pulled a lot of cross #includes by the printing logic.

[marehr]

Of course, this can also be changed into a compiler error, like this:

Suggested change

	throw std::runtime_error{msg};
	static_assert(std::is_same<t_, void>, "Type is not printable.");

Could be even a compile time decision ala SEQAN3_PRINTER_COMPILE_TIME_ERROR

[marehr]

This is literally the order to print everything, top to bottom, from most specific to most general.

Printers that handle explicit types (like std::nullopt, seqan3::mask) should be higher up in this order.

[marehr]

This shows that we don't need any "guard" requirement helper, since we can define printer logic locally and don't need to think about the possible global "state" (i.e. other types that might fulfil the same concept but should not be taken).

[marehr]

How simple this can be :)

Of course, we still have the cost of ensuring the correct print order, but it can be seen in a single place at the definition of seqan3::default_printer.

[marehr]

:)

debug_streamable_tuple = complicated, tuple_like = straightforward

[marehr]

Having all forward declarations in one place is nice, since you know what overloads we have. Also, you can search the code base for the real implementation. This was also always complicated to find the correct << overload for a given type.

The complete mechanism is based on two-phase_lookup. That means, the include order of the headers can be completely arbitrary. As long as the header is included, which is necessary to print the type, the type will be printed correctly.

Furthermore, we circumvent a lot of ADL lookup time. This could be furthermore improved if we don't use the << operator at all in the print definition.

[marehr]

Note that this printer definition does not need to know ANYTHING about seqan3::debug_stream.

Printer Definition is highly local and highly decoupled.

And furthermore, as long as alignment_printer is not explicitly instantiated, the compiler will just do a quick look if the entity names are defined. That means the risk of weird compiler behaviour, infinite recursion, stupid requires rules, etc.., is mostly circumvented, since the code is "dead"-code for the compiler, as long as it is not USED. This tremendously helps to reduce the risk during major compiler migrations.

[eseiler]

Thanks a lot!

Can you also add a to-do list with stuff that still must/needs/should be done regarding the code?

[marehr]

Thanks a lot!

Can you also add a to-do list with stuff that still must/needs/should be done regarding the code?

Not sure if you meant it like this:

• Approve the idea
• Add documentation
• Use std::same_as instead of std::is_same_v in require checks
• Split default_printer.hpp into multiple header
  • printer_fwd.hpp: Put printer forward declarations into own forward header
  • printer_order.hpp: Put printer_order and printable into it (you might want to use seqan3::type_list::find_index`)
  • std_printer.hpp: Put std_printer struct def into
  • integral_printer.hpp: Put integral_printer struct def into
  • default_printer.hpp: Keep default_printer struct
• The underlying stream of debug_stream should be accessible by (public) api (removes friend decls)
• Decide how seqan3::shape should be printed
  

  seqan3/test/snippet/search/kmer_index/shape.cpp

  Lines 12 to 26 in f97db83

  	#if 1
  	// this case is fun, as seqan3::shape has no explicit std::cout/debug_stream overload.
  	// * if we have
  	// printer_order<debug_stream_printer, std_printer, input_range_printer>
  	// the std::cout overload of seqan3::dynamic_bitset will win as it is the most specific
  	// seqan3::debug_stream << s0; will print 11111
  	// * if we have
  	// printer_order<debug_stream_printer, input_range_printer, std_printer>
  	// the input_range_printer will win since seqan3::dynamic_bitset is an input_range
  	// seqan3::debug_stream << s0; will print [1,1,1,1,1]
  	//
  	// Interestingly seqan3::dynamic_bitset has also an debug_stream overload, but this one will
  	// only be active if the type is seqan3::dynamic_bitset
  	// seqan3::debug_stream << (seqan3::dynamic_bitset<58>&)s0; will print 1'1111
  	#endif

• Replace all operator<< by printer structs (all #if 1 sections)
• Test basic correctness of structs like
  • concept seqan3::printable
  • struct seqan3::printer_order and all public api printer_for_t, printers_for_t (this one is basically just there for debugging purposes as it gives a list of printers that can print that type), is_printable, print
• Each print test should just test that the given printer struct (e.g. alphabet_printer) is able to print the instance of the type; to avoid unnecessary includes.
• Future: You might want to have a single typed test for each printer test since, seqan3::alphabet_printer and seqan3::default_printer behave the same, calling wise. The idea would be, one test instance where just seqan3::alphabet_printer is included without any other include dependency, and one test where all other printers are included (basically seqan3/debugstream/all.hpp) with the same "TypedTest".

Do you see more?

[eseiler]

Resolved by #3259