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Implement Decipher model in external #3015

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Implement Decipher model in external #3015

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Commits on Oct 10, 2024

  1. first draft of moving decipher model into scvi-tools

    @justjhong
    justjhong committed Oct 10, 2024
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Commits on Oct 14, 2024

  1. add early stopping based on predictive nll and freeze batch norm afte… 

    …r first epoch
    @justjhong
    justjhong committed Oct 14, 2024
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  2. add get latent rep to model class

    @justjhong
    justjhong committed Oct 14, 2024
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  3. remove impute fn for now

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    justjhong committed Oct 14, 2024
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  4. revert base module lints

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    justjhong committed Oct 14, 2024
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  5. converges but with blobby latent space

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    justjhong committed Oct 14, 2024
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  6. fix batch norm freezing and move pll impl into module

    @justjhong
    justjhong committed Oct 14, 2024
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  7. fix save/load

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    justjhong committed Oct 14, 2024
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Commits on Oct 15, 2024

  1. drop last and fix loss scaling

    @justjhong
    justjhong committed Oct 15, 2024
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  2. fix tests, remove validation step from base training plan

    @justjhong
    justjhong committed Oct 15, 2024
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  3. first draft of moving decipher model into scvi-tools

    @justjhong
    justjhong committed Oct 15, 2024
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  4. add early stopping based on predictive nll and freeze batch norm afte… 

    …r first epoch
    @justjhong
    justjhong committed Oct 15, 2024
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  5. add get latent rep to model class

    @justjhong
    justjhong committed Oct 15, 2024
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  6. remove impute fn for now

    @justjhong
    justjhong committed Oct 15, 2024
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  7. revert base module lints

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    justjhong committed Oct 15, 2024
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  8. converges but with blobby latent space

    @justjhong
    justjhong committed Oct 15, 2024
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  9. fix batch norm freezing and move pll impl into module

    @justjhong
    justjhong committed Oct 15, 2024
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  10. fix save/load

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    justjhong committed Oct 15, 2024
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  11. drop last and fix loss scaling

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    justjhong committed Oct 15, 2024
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  12. fix tests, remove validation step from base training plan

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    justjhong committed Oct 15, 2024
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  13. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
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    pre-commit-ci[bot] committed Oct 15, 2024
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  14. fix merge conflicts

    @justjhong
    justjhong committed Oct 15, 2024
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  15. [pre-commit.ci] auto fixes from pre-commit.com hooks 

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  16. fix ruff

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    justjhong committed Oct 15, 2024
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  17. [pre-commit.ci] auto fixes from pre-commit.com hooks 

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Commits on Oct 20, 2024

  1. Merge remote-tracking branch 'origin/main' into jhong/decipher

    access committed Oct 20, 2024
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  2. Merge branch 'main' into jhong/decipher

    @ori-kron-wis
    ori-kron-wis authored Oct 20, 2024
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  3. Merge remote-tracking branch 'origin/jhong/decipher' into jhong/decipher

    access committed Oct 20, 2024
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Commits on Oct 21, 2024

  1. fix tensor device bug for get latent

    @justjhong
    justjhong committed Oct 21, 2024
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  2. add docs and release note for decipher

    @justjhong
    justjhong committed Oct 21, 2024
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  3. Merge branch 'jhong/decipher' of github.com:scverse/scvi-tools into j… 

    …hong/decipher
    @justjhong
    justjhong committed Oct 21, 2024
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  4. check if this fixes the cuda test

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    ori-kron-wis committed Oct 21, 2024
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  5. check if this fixes the cuda test

    @ori-kron-wis
    ori-kron-wis committed Oct 21, 2024
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  6. check if this fixes the cuda test

    @ori-kron-wis
    ori-kron-wis committed Oct 21, 2024
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Commits on Oct 22, 2024

  1. add Decipher to docs

    @justjhong
    justjhong committed Oct 22, 2024
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  2. Merge branch 'jhong/decipher' of github.com:scverse/scvi-tools into j… 

    …hong/decipher
    @justjhong
    justjhong committed Oct 22, 2024
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  3. Merge branch 'main' into jhong/decipher

    @justjhong
    justjhong authored Oct 22, 2024
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  4. fix docs

    @justjhong
    justjhong committed Oct 22, 2024
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  5. add doi

    @justjhong
    justjhong committed Oct 22, 2024
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Commits on Oct 31, 2024

  1. Merge branch 'main' into jhong/decipher

    @justjhong
    justjhong authored Oct 31, 2024
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Commits on Nov 3, 2024

  1. remove prior arg

    @justjhong
    justjhong committed Nov 3, 2024
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  2. Merge branch 'jhong/decipher' of github.com:scverse/scvi-tools into j… 

    …hong/decipher
    @justjhong
    justjhong committed Nov 3, 2024
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  3. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
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