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@grst grst released this 07 Sep 13:23
v0.9.0
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Learn about vigilant mode.

Additions

  • Add the new "clonotype modularity" tool which ranks clonotypes by how strongly connected their gene expression neighborhood graph is. (#282).

The below example shows three clonotypes (164, 1363, 942), two of which consist of cells that are transcriptionally related.

example clonotypes clonotype modularity vs. FDR

Deprecations

  • tl.clonotype_imbalance is now deprecated in favor of the new clonotype modularity tool.

Fixes

  • Fix calling locus from gene name in some cases (#288)
  • Compatibility with networkx>=2.6 (#292)

Minor updates

  • Fix some links in README (#284)
  • Fix old instances of clonotype in docs (should be clone_id) (#287)
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