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@grst grst released this 15 Nov 19:51
v0.10.0
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Learn about vigilant mode.

Additions

This release adds a new feature to query reference databases (#298) comprising

  • an extension of pp.ir_dist to compute distances to a reference dataset,
  • tl.ir_query, to match immune receptors to a reference database based on the distances computed with ir_dist,
  • tl.ir_query_annotate and tl.ir_query_annotate_df to annotate cells based on the result of tl.ir_query, and
  • datasets.vdjdb which conveniently downloads and processes the latest version of VDJDB.

Fixes

  • Bump minimal dependencies for networkx and tqdm (#300)
  • Fix issue with repertoire_overlap (Fix #302 via #305)
  • Fix issue with define_clonotype_clusters (Fix #303 via #305)
  • Suppress FutureWarnings from pandas in tutorials (#307)

Internal changes

  • Update sphinx to >= 4.1 (#306)
  • Update black version
  • Update the internal folder structure: tl, pp etc. are now real packages instead of aliases
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