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Update changelog (#490)
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grst authored Feb 1, 2024
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Expand Up @@ -8,12 +8,12 @@ and this project adheres to [Semantic Versioning][].
[keep a changelog]: https://keepachangelog.com/en/1.0.0/
[semantic versioning]: https://semver.org/spec/v2.0.0.html

## Unreleased
## v0.16.0

### Backwards-incompatible changes

- Use the `umi_count` field instead of `duplicate_count` to store UMI counts. The field `umi_count` has been added to
the AIRR Rearrangement standard in [version 1.4](https://docs.airr-community.org/en/latest/news.html#version-1-4-1-august-27-2022).
the AIRR Rearrangement standard in [version 1.4](https://docs.airr-community.org/en/latest/news.html#version-1-4-1-august-27-2022) ([#487](https://github.com/scverse/scirpy/pull/487)).
Use of `duplicate_count` for UMI counts is now discouraged. Scirpy will use `umi_count` in all `scirpy.io` functions.
It will _not_ change AIRR data that is read through `scirpy.io.read_airr` that still uses the `duplicate_count` column.
Scirpy remains compatible with datasets that still use `duplicate_count`. You can update your dataset using
Expand All @@ -22,6 +22,10 @@ and this project adheres to [Semantic Versioning][].
adata.obsm["airr"]["umi_count"] = adata.obsm["airr"]["duplicate_count"]
```

### Other

- the `io.to_dandelion` and `io.from_dandelion` interoperability functions now rely on the implementation provided by Dandelion itself ([#483](https://github.com/scverse/scirpy/pull/483)).

## v0.15.0

### Fixes
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