Hill diversity profile #585
Workflow file for this run
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name: Test tutorials | |
on: | |
push: | |
branches: [main] | |
pull_request: | |
branches: [main] | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: true | |
jobs: | |
test: | |
runs-on: ${{ matrix.os }} | |
defaults: | |
run: | |
shell: bash -e {0} # -e to fail on error | |
strategy: | |
fail-fast: false | |
matrix: | |
tutorial: | |
- tutorial_3k_tcr.ipynb | |
- tutorial_io.ipynb | |
- tutorial_5k_bcr.ipynb | |
os: | |
- ubuntu-latest | |
python: | |
- "3.10" | |
env: | |
OS: ${{ matrix.os }} | |
PYTHON: ${{ matrix.python }} | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python ${{ matrix.python }} | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python }} | |
cache: "pip" | |
cache-dependency-path: "**/pyproject.toml" | |
- name: Install test dependencies | |
run: | | |
python -m pip install --upgrade pip wheel | |
- name: Install dependencies | |
run: | | |
pip install ".[doc]" | |
- name: Test | |
env: | |
MPLBACKEND: agg | |
PLATFORM: ${{ matrix.os }} | |
DISPLAY: :42 | |
run: | | |
jupytext -k python3 --execute docs/tutorials/${{ matrix.tutorial }} |