CATG (Collinearity-based Assembly correcTor GUI) is a GUI application base on Qt with PySide6. It is a tool that can adjust assembly with collinearity and generate tour files for assembly.
CATG is now published in G3 Genes|Genomes|Genetics
Zhang S, Du H, Zhang X, Wang B. 2024 Nov 22. Collinearity-based Assembly Correction Tool GUI: Software for collinearity-based genome assembly correction. G3 Genes|Genomes|Genetics.:jkae277. doi:10.1093/g3journal/jkae277.
User can download executable file with following links.
- Windows user
- https://github.com/sc-zhang/CATG/releases/download/v1.2.2/CATG-v1.2.2.exe
- https://zenodo.org/records/13621059/files/CATG-v1.2.2.exe?download=1
- Mac user (Apple silicon)
- https://github.com/sc-zhang/CATG/releases/download/v1.2.2/CATG-v1.2.2.arm.dmg
- https://zenodo.org/records/13621059/files/CATG-v1.2.2.arm.dmg?download=1
- Mac user (Intel silicon)
- https://github.com/sc-zhang/CATG/releases/download/v1.2.2/CATG-v1.2.2.Intel.dmg
- https://zenodo.org/records/13621059/files/CATG-v1.2.2.Intel.dmg?download=1
- Ubuntu user
- https://github.com/sc-zhang/CATG/releases/download/v1.2.2/CATG-v1.2.2.bin
- https://zenodo.org/records/13621059/files/CATG-v1.2.2.bin?download=1
The online version of user manual could be found in CATG Wiki
The pdf version of user manual could be found in CATG User Guide
- Test data could be found in following links.
- https://github.com/sc-zhang/CATG/archive/refs/tags/v1.2.2.zip
- https://zenodo.org/records/13621059/files/sc-zhang/CATG-v1.2.2.zip?download=1
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Unzip this compressed file, a file named "test.tar.gz" could be found in test folder, then unzip test.tar.gz, four files: qry.agp, qry.bed, qry.ref.anchors, ref.bed could be found which can be used with this tool.
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test.tar.gz also could be found in following links.