Clinical Backend Final v1.0.0

What's Changed

• fix: update patient registration workflow by @Salaton in #81
• feat: implement create organization by @Salaton in #82
• feat: create FHIR observations by @Salaton in #83
• feat: create FHIR allergy intolerance by @Salaton in #84
• feat: create fhir medication statement by @Muchogoc in #85
• feat: create test result FHIR observation by @Salaton in #86
• fix: store vital signs value as value strings by @Salaton in #88
• chore: create organization pubsub topic by @Salaton in #89
• chore: add graphql medication statement and medication types by @Muchogoc in #90
• feat: medication statement search by @Muchogoc in #91
• feat: simple health timeline by @Muchogoc in #87
• fix: create observations and patient timeline count by @Muchogoc in #92
• fix: change medication statement in timeline by @Muchogoc in #93
• feat: fetching medical data: allergies, regimen, weight, bmi, viral by @Muchogoc in #94
• chore: add fhir organisation id to mycarehub facilities by @KathurimaKimathi in #95
• chore: push schema to prod and staging schema registry by @Salaton in #97
• chore: add patient and organization names in observations by @KathurimaKimathi in #96
• chore: remove redundant onboarding service by @Muchogoc in #98
• chore: setup sentry by @KathurimaKimathi in #99
• chore: paginated patient health timeline by @Muchogoc in #104
• chore: refactor clinical code by @KathurimaKimathi in #102
• chore:delete patient isc endpoint by @KathurimaKimathi in #107
• chore: remove organization from allergy intolerance by @KathurimaKimathi in #108
• fix: fhir allergy intolerance payload composition by @Muchogoc in #109
• fix: add manifestation to allergy intolerance payload by @Salaton in #110
• fix: purge observation resources before deleting patient resource by @Salaton in #111
• chore: restructure medical data pubsub subscription by @Muchogoc in #112
• ci: separate deployment workflow into different files by @Salaton in #113
• ci: deploy demo environment by @Salaton in #114
• chore: add mycarehub demo to deps.yaml by @Salaton in #115
• ci: push schema to demo schema registry by @Salaton in #116
• chore(deps): bump serverutils version by @Salaton in #117
• chore: assorted chores by @KathurimaKimathi in #119
• fix(ci): update push to test schema registry workflow by @Salaton in #120
• chore: remove sentry error reporting on some methods by @Salaton in #121
• chore: update error messages sent to sentry by @Salaton in #122
• feat(ci): deploy multitenant staging environment by @Salaton in #123
• feat: authenticate APIs using slade auth server by @Salaton in #129
• chore: fix multitenant staging deployment by @Salaton in #130
• chore: purge firebase implementation by @Salaton in #131
• chore: purge casbin authorization implementation by @Salaton in #132
• refactor: combine clinical and fhir usecase by @Salaton in #133
• refactor: move fhirdataset into cloudhealthcare by @Salaton in #134
• refactor: move create patient logic into the infrastructure layer by @Salaton in #135
• refactor: move some logic into infra layers by @Salaton in #136
• refactor: move search patient logic to infra layer by @Salaton in #137
• feat: add graphql api to create fhir organization by @Salaton in #139
• chore: add meta and extension structs by @Salaton in #140
• fix: remove dependency between pubsub and ocl usecase by @Salaton in #142
• feat: introduce ID extraction middleware by @Salaton in #143
• chore: remove pubsub code from extension file by @Salaton in #144
• feat: retrieve tenant identifiers from context by @Salaton in #145
• feat: verify organisation provided in header exists by @Muchogoc in #146
• feat: add tags when creating resources by @Muchogoc in #147
• chore: upgrade go to 1.19 by @Muchogoc in #149
• chore: remove unused use-casess by @Muchogoc in #150
• chore: update code to adhere to additional Go linting rules by @Muchogoc in #151
• feat: introduce gin and retire mux router by @Salaton in #152
• chore: additional linters to improve code quality by @Muchogoc in #153
• chore: remove redundant mocks by @Muchogoc in #154
• chore: add search resource dataset helper method by @Muchogoc in #155
• chore: refactor dataset.go by @Salaton in #156
• chore: unmarshal to a resource in create resource dataset method by @Muchogoc in #157
• refactor: move pubsub webhook implementation from infrastructure to u… by @Salaton in #158
• chore: whitespace linter by @Muchogoc in #159
• test: add fhir unit tests by @Salaton in #160
• ref: datastore resource methods by @Muchogoc in #161
• tests: add sad cases to usecase unit tests by @Salaton in #162
• chore: add unit tests by @maxwellgithinji in #163
• chore: add mycarehub service unit tests by @maxwellgithinji in #164
• tests: fhir unit test by @Muchogoc in #165
• chore: add helper tests by @maxwellgithinji in #166
• tests: remove patient data test by @Muchogoc in #167
• chore: add common tests by @maxwellgithinji in #168
• tests: add pubsub usecase tests by @Salaton in #169
• test: usecase unit tests by @Muchogoc in #170
• test: ocl unit tests by @Muchogoc in #171
• tests: add domain layer tests by @Salaton in #172
• chore: setting up http routes by @Muchogoc in #173
• chore: test application packages by @maxwellgithinji in #174
• test: handlers unit tests by @Muchogoc in #175
• feat: api to create a tenant by @Muchogoc in #176
• feat: add create facility API by @Salaton in #178
• chore: Running gin in "release" mode for production by @Salaton in #179
• chore: facility request header by @Muchogoc in #180
• feat: create episode of care by @Muchogoc in #181
• feat: start encounter by @Salaton in #183
• feat: end encounter by @Salaton in #185
• chore: update health timeline struct by @maxwellgithinji in #184
• feat: list a patient's encounters by @Salaton in #187
• chore: update allergy intolerance to use minimal fhir resources by @maxwellgithinji in #186
• chore: add observation models and graphql types by @Salaton in #189
• feat: use tenant identifiers to filter resources in search by @Muchogoc in #188
• chore: update observation struct by @maxwellgithinji in #190
• feat: record patient temperature by @Salaton in #193
• chore: add terminology codes for vital signs by @Salaton in #194
• feat: record patient height api by @Salaton in #195
• feat: introduce record weight api by @Salaton in #196
• feat: record respiratory rate api by @Salaton in #197
• feat: add api to record patient pulse rate by @Salaton in #198
• feat: add api to record patient blood pressure by @Salaton in #199
• feat: add api to record patient BMI by @Salaton in #200
• chore(deps): bump actions/setup-go from 2 to 4 by @dependabot in #177
• chore: update medication statement by @maxwellgithinji in #192
• feat: register patient by @Muchogoc in #191
• feat: episode of care retrieve and end by @Muchogoc in #202
• feat: get patient's temperature entries by @Salaton in #203
• feat: get patient's blood pressure entries by @Salaton in #204
• feat: get patient height entries by @maxwellgithinji in #201
• feat: get patient's respiratory rate entries by @Salaton in #205
• feat: get patient pulse rate by @maxwellgithinji in #206
• feat: retrieve patient's BMI entries by @Salaton in #207
• feat: get patient weight by @maxwellgithinji in #208
• feat: create condition by @Muchogoc in #209
• feat: create allergy intolerance by @maxwellgithinji in #210
• feat: list patient conditions by @Muchogoc in #212
• chore: add allergy enums by @maxwellgithinji in #211
• feat: search allergy by @KathurimaKimathi in #213
• feat: get allergy intolerance by id by @KathurimaKimathi in #214
• feat: list patient condition pagination by @Muchogoc in #215
• chore: add pagination parameters by @Muchogoc in #217
• feat: register clinical tenenant via pubsub by @KathurimaKimathi in #216
• chore: add facility id to records created via pubsub by @Muchogoc in #218
• fix: correct json tag naming by @Muchogoc in #220
• chore: use uppercase enums by @Muchogoc in #221
• fix: multitenant clinical patient registration and patient data creation by @Muchogoc in #222
• fix: tenant creation when a program is created in mch by @KathurimaKimathi in #223
• feat(ci): setup pipeline to deploy to GKE by @Salaton in #225
• feat: get patient allergy intolerance by @KathurimaKimathi in #219
• chore: add encounters pagination by @KathurimaKimathi in #228
• chore: change pubsub to v2, remove encounter check by @Muchogoc in #231
• feat: add middleware to validate mycarehub tokens by @Muchogoc in #232
• chore: add patient ID in synced patient data by @Muchogoc in #234
• fix: synced medical data by @Muchogoc in #235
• chore: add ocl concept pagination by @KathurimaKimathi in #233
• chore: add FHIR observations API pagination by @KathurimaKimathi in #236
• fix: add allergy name by @maxwellgithinji in #237
• feat: get patient viral load by @KathurimaKimathi in #238
• feat: record patient viral load by @KathurimaKimathi in #239
• feat: create media in FHIR respository by @KathurimaKimathi in #241
• fix: health timeline display by @maxwellgithinji in #243
• fix: medication statement display in timeline by @maxwellgithinji in #244
• fix: get viral load by @maxwellgithinji in #245
• feat: get patient media resources by @KathurimaKimathi in #242
• feat(ci): deploy clinical service SIL copy by @Salaton in #246
• feat(ci): deploy multitenant prod environment by @Salaton in #247
• fix: update fhir patient id by @maxwellgithinji in #249
• fix: update fhir patient id by @maxwellgithinji in #250
• feat(ci): deploy sil prod copy by @Salaton in #252
• chore: transition to pubsub from HTTP inter service calls by @Salaton in #253
• chore: deprecate http interservice communication code by @Salaton in #254
• chore: remove deps.yaml from dockerfile by @Salaton in #255
• chore: allow null identifiers and contact for patient input by @KathurimaKimathi in #256
• chore: Remove phone number uniqueness check when registering patients by @st3v3nmw in #257
• feat: Add patient deletion mutation by @st3v3nmw in #258
• fix: skip organisation resource when deleting patient data by @Salaton in #259
• feat: Add patient patch mutation by @st3v3nmw in #260
• add muac missing vital by @EspiraMarvin in #261
• feat: add missing vital Spo2 by @EspiraMarvin in #263
• feat: Add mutation to patch episode of care by @st3v3nmw in #262
• feat: Add mutation to patch encounters by @st3v3nmw in #264
• add advantage development origin url by @EspiraMarvin in #265
• add allowed headers by @EspiraMarvin in #266
• expose muac patient vital query by @EspiraMarvin in #267
• expose oxygen saturation query by @EspiraMarvin in #268
• add timestamp to vitals by @EspiraMarvin in #269
• add advantage origin by @EspiraMarvin in #270
• add unknown enum condition status by @EspiraMarvin in #271
• add timestamp to patient's timeline by @EspiraMarvin in #272
• fix: condition output by @KathurimaKimathi in #273
• fix: get condition concept depending on the provided source by @KathurimaKimathi in #274
• add category input to Condition by @EspiraMarvin in #275
• add conditions to patient timeline by @EspiraMarvin in #276
• fix: fix listing of patient conditions by @EspiraMarvin in #278
• fix: check encounter finished status when creating allergies by @EspiraMarvin in #279
• feat: add record blood sugar api by @Salaton in #280
• feat: add api to fetch a patient's blood sugar observation by @Salaton in #281
• add last menstrual period vital by @EspiraMarvin in #283
• add diastolic blood pressure observation by @EspiraMarvin in #284
• adds fetching patient's diastolic blood pressure by @EspiraMarvin in #286
• feat: token caching by @Muchogoc in #287
• feat: add composition resource by @EspiraMarvin in #282
• list patient's compositions by @EspiraMarvin in #289
• query observations with encounterID filter by @EspiraMarvin in #290
• query conditions with encounterID by @EspiraMarvin in #291
• query compositions with encounterID by @EspiraMarvin in #292
• feat: add date filter query on observations by @EspiraMarvin in #293
• feat: add date filter on conditions by @EspiraMarvin in #294
• feat: add date filter on composition by @EspiraMarvin in #295
• chore: configure sentry sample rate by @KathurimaKimathi in #297
• chore: add empower urls to allowed origins by @Salaton in #300
• feat: append notes to composition section by @EspiraMarvin in #299
• feat: patch patient height observation by @EspiraMarvin in #301

New Contributors

• @dependabot made their first contribution in #177
• @st3v3nmw made their first contribution in #257
• @EspiraMarvin made their first contribution in #261

Full Changelog: v0.0.1...v1.0.0