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Switch bai -> csi index #143

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Jan 15, 2025
Merged

Switch bai -> csi index #143

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2 changes: 1 addition & 1 deletion subworkflows/local/align_pacbio.nf
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Expand Up @@ -49,7 +49,7 @@ workflow ALIGN_PACBIO {

// Align without map reduce
// Align Fastq to Genome with minimap2. bam_format is set to true, making the output a *sorted* BAM
MINIMAP2_ALIGN ( FILTER_PACBIO.out.fastq, fasta, true, "bai", false, false )
MINIMAP2_ALIGN ( FILTER_PACBIO.out.fastq, fasta, true, "csi", false, false )
ch_versions = ch_versions.mix ( MINIMAP2_ALIGN.out.versions.first() )

// Collect all alignment output by sample name
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