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Replace BlastN by Minimap2 splice.#104

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reichan1998 wants to merge 13 commits intosanger-tol:devsanger-tol/readmapping:devfrom reichan1998:try_minimap2_splicereichan1998/readmapping:try_minimap2_spliceCopy head branch name to clipboard

+63-43

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Commits on Aug 6, 2024

• Replace blastn module by minimap2_splice

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  cbd63e4

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• edit minimap2_splice

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  b5dacbb

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• fix editorconfig-checker

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  575df6f

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• fix format

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  009fd63

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• fix format

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  7568c5b

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Commits on Aug 9, 2024

• set splice using ext.args in the existing minimap2_align nf-core module

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  e9e9bfa

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• fix format

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  7581707

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• fix format

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  3856a53

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• fix nf-core lint

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  2029d1e

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• change MINIMAP2_SPLICE to MINIMAP2_ALIGN

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  ca4f775

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Commits on Aug 13, 2024

• Return the default MINIMAP_ALIGN, gzipped vectorDB, modify pacbio_filter.sh

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  54bda0f

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• fix nf-core linting

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  343a2f9

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• fix nf-core linting

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  4371617

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