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Implement cram chunking for PacBio and Nanopore #276

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Implement cram chunking for PacBio and Nanopore

Implement cram chunking for PacBio and Nanopore #276

Run time

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Job Run time
Run pipeline with test data (22.10.1)
32m 39s
Run pipeline with test data (latest-everything)
32m 38s
1h 5m 17s