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This repository has been archived by the owner on Nov 7, 2021. It is now read-only.

Issues: sanger-pathogens/companion

27 Open 70 Closed
27 Open 70 Closed
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Issues list

Add track with contig placements to Circos plots
#157 opened Jun 15, 2021 by ghost
Option for filtering gene models with introns as pseudogenes in kinetoplastids
#153 opened Jun 15, 2021 by ghost
docker problems
#108 opened Jun 15, 2021 by ghost
First attempt to run test job fails
#107 opened Jun 15, 2021 by ghost
Extremely long runtime due to OrthoMCL
#106 opened Jun 15, 2021 by ghost
How to generate the file ".../example-data/references/_all/all_orthomcl.out"
#105 opened Jun 15, 2021 by ghost
missing pseudochr.fasta.gz for Leishmania in Public server (is Companion still supported)
#103 opened Jun 15, 2021 by ghost
GTF file not correct format or does not contain any exon feature
#102 opened Jun 15, 2021 by ghost
SNAP error
#101 opened Jun 15, 2021 by ghost
SNAP error
#100 opened Mar 3, 2021 by WanessaMGoes
1
GTF file not correct format or does not contain any exon feature
#99 opened Nov 19, 2020 by SantiagoMille
missing pseudochr.fasta.gz for Leishmania in Public server (is Companion still supported)
#98 opened Oct 29, 2020 by rosshandler
1
How to generate the file ".../example-data/references/_all/all_orthomcl.out"
#96 opened Aug 17, 2020 by ybdong919
Extremely long runtime due to OrthoMCL
#95 opened Jul 10, 2020 by bgbrink
First attempt to run test job fails
#94 opened Feb 5, 2020 by jorvis
1
docker problems
#93 opened Sep 4, 2019 by glucksfall
6
No such file or directory for .fasta (when using Singularity)
#92 opened Aug 30, 2019 by bgbrink
missing main.nf
#91 opened Mar 26, 2019 by yveuno
gff files do not contain exons
#87 opened Aug 22, 2018 by bgbrink
error from update_references.lua support
#80 opened Jun 5, 2018 by xinliu005
@satta
21
Bioconda
#77 opened Jan 27, 2017 by mictadlo
1
sub-optimal performance on fungal genome
#76 opened Jan 25, 2017 by flashton2003
5
ENA style EMBL output must contain reference information enhancement
#74 opened Sep 28, 2016 by satta
adding JBrowse output enhancement
#68 opened Aug 30, 2016 by mictadlo
1
Allow limiting the maximum length of product calls enhancement
#52 opened Feb 18, 2016 by satta
ProTip! What’s not been updated in a month: updated:<2024-10-15.