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feat: use project overarching vars #239

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feat: use project overarching vars #239

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4446f9b
feat: use project overarching vars
Oct 15, 2024
022d6e9
to squash
Oct 15, 2024
2b391a5
minor fix
Oct 15, 2024
5f5e626
minor fix
Oct 15, 2024
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2 changes: 1 addition & 1 deletion bbmri/docker-compose.yml
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Expand Up @@ -4,7 +4,7 @@ version: "3.7"

services:
blaze:
image: docker.verbis.dkfz.de/cache/samply/blaze:0.28
image: docker.verbis.dkfz.de/cache/samply/blaze:${BLAZE_TAG}
container_name: bridgehead-bbmri-blaze
environment:
BASE_URL: "http://bridgehead-bbmri-blaze:8080"
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1 change: 1 addition & 0 deletions bbmri/vars
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Expand Up @@ -7,6 +7,7 @@
FOCUS_RETRY_COUNT=${FOCUS_RETRY_COUNT:-64}
PRIVATEKEYFILENAME=/etc/bridgehead/pki/${SITE_ID}.priv.pem

source versions
for module in $PROJECT/modules/*.sh
do
log DEBUG "sourcing $module"
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2 changes: 1 addition & 1 deletion bridgehead
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Expand Up @@ -64,7 +64,7 @@ loadVars() {
fetchVarsFromVaultByFile /etc/bridgehead/$PROJECT.conf || fail_and_report 1 "Unable to fetchVarsFromVaultByFile"
setHostname
optimizeBlazeMemoryUsage
[ -e ./$PROJECT/vars ] && source ./$PROJECT/vars
[ -e ./$PROJECT/vars ] && source ./versions ./$PROJECT/vars
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Sorry to bother you again I meant sourcing ./versions regardless of ./$PROJECT/vars existing. I think it always exits so it should not really matter but if we have the check that anyway

set +a

OVERRIDE=${OVERRIDE:=""}
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2 changes: 1 addition & 1 deletion cce/docker-compose.yml
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Expand Up @@ -2,7 +2,7 @@ version: "3.7"

services:
blaze:
image: docker.verbis.dkfz.de/cache/samply/blaze:0.28
image: docker.verbis.dkfz.de/cache/samply/blaze:${BLAZE_TAG}
container_name: bridgehead-cce-blaze
environment:
BASE_URL: "http://bridgehead-cce-blaze:8080"
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1 change: 1 addition & 0 deletions cce/vars
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Expand Up @@ -7,6 +7,7 @@ [email protected]
PRIVATEKEYFILENAME=/etc/bridgehead/pki/${SITE_ID}.priv.pem
BROKER_URL_FOR_PREREQ=$BROKER_URL

source versions
for module in $PROJECT/modules/*.sh
do
log DEBUG "sourcing $module"
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2 changes: 1 addition & 1 deletion ccp/docker-compose.yml
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Expand Up @@ -2,7 +2,7 @@ version: "3.7"

services:
blaze:
image: docker.verbis.dkfz.de/cache/samply/blaze:0.28
image: docker.verbis.dkfz.de/cache/samply/blaze:${BLAZE_TAG}
container_name: bridgehead-ccp-blaze
environment:
BASE_URL: "http://bridgehead-ccp-blaze:8080"
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5 changes: 3 additions & 2 deletions ccp/modules/blaze-secondary-compose.yml
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Expand Up @@ -2,13 +2,14 @@ version: "3.7"

services:
blaze-secondary:
image: docker.verbis.dkfz.de/cache/samply/blaze:0.28
image: docker.verbis.dkfz.de/cache/samply/blaze:${BLAZE_TAG}
container_name: bridgehead-ccp-blaze-secondary
environment:
BASE_URL: "http://bridgehead-ccp-blaze-secondary:8080"
JAVA_TOOL_OPTIONS: "-Xmx${BLAZE_MEMORY_CAP:-4096}m"
DB_RESOURCE_CACHE_SIZE: ${BLAZE_RESOURCE_CACHE_CAP:-2500000}
DB_BLOCK_CACHE_SIZE: $BLAZE_MEMORY_CAP
DB_BLOCK_CACHE_SIZE: ${BLAZE_MEMORY_CAP}
CQL_EXPR_CACHE_SIZE: ${BLAZE_CQL_CACHE_CAP:-32}
ENFORCE_REFERENTIAL_INTEGRITY: "false"
volumes:
- "blaze-secondary-data:/app/data"
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3 changes: 1 addition & 2 deletions ccp/vars
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Expand Up @@ -18,8 +18,7 @@ OIDC_URL="https://login.verbis.dkfz.de"
OIDC_ISSUER_URL="${OIDC_URL}/realms/${OIDC_REALM}"
OIDC_GROUP_CLAIM="groups"

POSTGRES_TAG=15.6-alpine

source versions
for module in $PROJECT/modules/*.sh
do
log DEBUG "sourcing $module"
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4 changes: 2 additions & 2 deletions dhki/docker-compose.yml
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Expand Up @@ -2,7 +2,7 @@ version: "3.7"

services:
blaze:
image: docker.verbis.dkfz.de/cache/samply/blaze:0.28
image: docker.verbis.dkfz.de/cache/samply/blaze:${BLAZE_TAG}
container_name: bridgehead-dhki-blaze
environment:
BASE_URL: "http://bridgehead-dhki-blaze:8080"
Expand Down Expand Up @@ -39,7 +39,7 @@ services:
- "blaze"

beam-proxy:
image: docker.verbis.dkfz.de/cache/samply/beam-proxy:develop
image: docker.verbis.dkfz.de/cache/samply/beam-proxy:${BEAM_TAG}
container_name: bridgehead-beam-proxy
environment:
BROKER_URL: ${BROKER_URL}
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3 changes: 1 addition & 2 deletions dhki/vars
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Expand Up @@ -8,8 +8,7 @@ PRIVATEKEYFILENAME=/etc/bridgehead/pki/${SITE_ID}.priv.pem

BROKER_URL_FOR_PREREQ=$BROKER_URL

POSTGRES_TAG=15.6-alpine

source versions
for module in ccp/modules/*.sh
do
log DEBUG "sourcing $module"
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2 changes: 1 addition & 1 deletion itcc/docker-compose.yml
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Expand Up @@ -2,7 +2,7 @@ version: "3.7"

services:
blaze:
image: docker.verbis.dkfz.de/cache/samply/blaze:0.28
image: docker.verbis.dkfz.de/cache/samply/blaze:${BLAZE_TAG}
container_name: bridgehead-itcc-blaze
environment:
BASE_URL: "http://bridgehead-itcc-blaze:8080"
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1 change: 1 addition & 0 deletions itcc/vars
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Expand Up @@ -7,6 +7,7 @@ [email protected]
PRIVATEKEYFILENAME=/etc/bridgehead/pki/${SITE_ID}.priv.pem
BROKER_URL_FOR_PREREQ=$BROKER_URL

source versions
for module in $PROJECT/modules/*.sh
do
log DEBUG "sourcing $module"
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4 changes: 2 additions & 2 deletions kr/docker-compose.yml
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Expand Up @@ -6,7 +6,7 @@ services:
replicas: 0 #deactivate landing page

blaze:
image: docker.verbis.dkfz.de/cache/samply/blaze:0.28
image: docker.verbis.dkfz.de/cache/samply/blaze:${BLAZE_TAG}
container_name: bridgehead-kr-blaze
environment:
BASE_URL: "http://bridgehead-kr-blaze:8080"
Expand Down Expand Up @@ -40,7 +40,7 @@ services:
- "blaze"

beam-proxy:
image: docker.verbis.dkfz.de/cache/samply/beam-proxy:develop
image: docker.verbis.dkfz.de/cache/samply/beam-proxy:${BEAM_TAG}
container_name: bridgehead-beam-proxy
environment:
BROKER_URL: ${BROKER_URL}
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15 changes: 0 additions & 15 deletions kr/modules/exporter.md
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This file was deleted.

19 changes: 0 additions & 19 deletions kr/modules/teiler.md
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This file was deleted.

1 change: 1 addition & 0 deletions kr/vars
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Expand Up @@ -7,6 +7,7 @@ [email protected]
PRIVATEKEYFILENAME=/etc/bridgehead/pki/${SITE_ID}.priv.pem
BROKER_URL_FOR_PREREQ=$BROKER_URL

source versions
for module in $PROJECT/modules/*.sh
do
log DEBUG "sourcing $module"
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6 changes: 3 additions & 3 deletions lib/functions.sh
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Expand Up @@ -170,11 +170,11 @@ optimizeBlazeMemoryUsage() {
available_system_memory_chunks=$((BLAZE_MEMORY_CAP / 1000))
if [ $available_system_memory_chunks -eq 0 ]; then
log WARN "Only ${BLAZE_MEMORY_CAP} system memory available for Blaze. If your Blaze stores more than 128000 fhir ressources it will run significally slower."
export BLAZE_RESOURCE_CACHE_CAP=128000;
export BLAZE_CQL_CACHE_CAP=32;
export BLAZE_RESOURCE_CACHE_CAP=128000
export BLAZE_CQL_CACHE_CAP=32
else
export BLAZE_RESOURCE_CACHE_CAP=$((available_system_memory_chunks * 312500))
export BLAZE_CQL_CACHE_CAP=$((($system_memory_in_mb/4)/16));
export BLAZE_CQL_CACHE_CAP=$((($system_memory_in_mb/4)/16))
fi
fi
}
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6 changes: 3 additions & 3 deletions lib/prepare-system.sh
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Expand Up @@ -57,9 +57,9 @@ case "$PROJECT" in
;;
itcc)
site_configuration_repository_middle="git.verbis.dkfz.de/itcc-sites/"
;;
dhki)
site_configuration_repository_middle="git.verbis.dkfz.de/dhki/"
;;
dhki)
site_configuration_repository_middle="git.verbis.dkfz.de/dhki/"
;;
kr)
site_configuration_repository_middle="git.verbis.dkfz.de/krebsregister-sites/"
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2 changes: 1 addition & 1 deletion lib/prerequisites.sh
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Expand Up @@ -67,7 +67,7 @@ fi
log INFO "Checking network access ($BROKER_URL_FOR_PREREQ) ..."

source "${CONFIG_DIR}${PROJECT}".conf
source ${PROJECT}/vars
source ${PROJECT}/vars vars

if [ "${PROJECT}" != "minimal" ]; then
set +e
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2 changes: 2 additions & 0 deletions minimal/vars
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@@ -1,3 +1,5 @@

source versions
for module in $PROJECT/modules/*.sh
do
log DEBUG "sourcing $module"
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2 changes: 2 additions & 0 deletions versions
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@@ -0,0 +1,2 @@
BLAZE_TAG=0.28
POSTGRES_TAG=15.6-alpine